CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68863
CDX70254
CDX73744
CDX75256
CDX77980
CDX80907
CDX83601
CDX84525
CDX87210
CDX97535
CDY02151
CDY23332
CDY30950
CDY31319
CDY33258
CDY39087
CDY41394
CDY46804
CDY51673
CDY58263
CDY64140
CDY65326
CDY67472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	CDX97535	AT3G13990.1	21798944
AT1G67170.1	CDY33258	AT3G13990.1	21798944
AT1G67170.1	CDY39087	AT3G13990.1	21798944
AT1G67170.1	CDY65326	AT3G13990.1	21798944
AT1G67170.1	CDX73744	AT3G51180.1	21798944
AT1G67170.1	CDX77980	AT3G51180.1	21798944
AT1G67170.1	CDX68863	AT4G32570.1	21798944
AT1G67170.1	CDX75256	AT4G32570.1	21798944
AT1G67170.1	CDX83601	AT4G32570.1	21798944
AT1G67170.1	CDY23332	AT4G32570.1	21798944
AT1G67170.1	CDY30950	AT4G32570.1	21798944
AT1G67170.1	CDY51673	AT4G32570.1	21798944
AT1G67170.1	CDX70254	AT5G04170.1	21798944
AT1G67170.1	CDX80907	AT5G04170.1	21798944
AT1G67170.1	CDY41394	AT5G04170.1	21798944
AT1G67170.1	CDY67472	AT5G04170.1	21798944
AT1G67170.1	CDX87210	AT5G61380.1	21798944
AT1G67170.1	CDY02151	AT5G61380.1	21798944
AT1G67170.1	CDY64140	AT5G61380.1	21798944
AT1G67170.1	CDX84525	AT5G64430.1	21798944
AT1G67170.1	CDY31319	AT5G64430.1	21798944
AT1G67170.1	CDY46804	AT5G64430.1	21798944
AT1G67170.1	CDY58263	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034018.1-P	Field mustard	nucleus	91.8	95.1
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	81.7	75.29
CDY01786	Canola	cytosol	81.07	73.85
CDY54119	Canola	mitochondrion	82.65	71.78
AT1G67170.1	Thale cress	nucleus	76.97	67.97
Os02t0192100-01	Rice	mitochondrion	35.96	45.6
VIT_14s0083g00450.t01	Wine grape	mitochondrion	60.57	44.34
KRH01477	Soybean	nucleus	52.37	41.09
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	30.28	40.34
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	50.47	36.95
Solyc02g065630.2.1	Tomato	nucleus	48.58	34.84
PGSC0003DMT400068308	Potato	plastid	48.9	34.29
HORVU6Hr1G034720.1	Barley	nucleus	41.01	28.57
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	42.27	28.27
TraesCS6D01G159700.1	Wheat	nucleus	41.64	28.27
TraesCS6A01G169900.1	Wheat	nucleus	41.32	28.05
CDY33066	Canola	nucleus	23.66	27.57
CDY24052	Canola	nucleus	23.34	27.21
CDY00237	Canola	mitochondrion	19.24	27.11
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.13	26.46
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	18.93	26.43
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	26.5	25.93
EES06432	Sorghum	mitochondrion	39.75	25.25
CDY10713	Canola	mitochondrion	18.93	21.58
CDY51010	Canola	nucleus	18.61	21.22
CDY08227	Canola	nucleus	19.56	18.9

Protein Annotations

EnsemblPlants:CDY12623	EnsemblPlantsGene:GSBRNA2T00070127001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	ProteinID:CDY12623
ProteinID:CDY12623.1	SEG:seg	UniParc:UPI0004EE06DA	UniProt:A0A078FKF0	MapMan:35.1	:

Description

BnaA02g12910DBnaA02g12910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKF0]

Coordinates

chrLK032025:+:304494..306111

Molecular Weight (calculated)

34771.0 Da

IEP (calculated)

6.852

GRAVY (calculated)

-0.737

Length

317 amino acids

Sequence
(BLAST)

001: MGSNGRVPPP HHMRRPGLPH PEAFGSVPSF NMLPPPHLME QKLAAQHGEM QRLAIENQRL AATHGNLRQE LAAAQHELQM LHSQIGSVKS DGEQRMSGLA
101: DKVAKMESEL RKSEALKLEM QEAHAEARSL VVAREELMSK VHHLTQELQK SRSDVQQVPA LMSELDGLRQ EYQQCRATYD YEKKFYNDHI ESLQAMEKNY
201: MTMAMEVQKL QAQLMNSANS DRGAGGHYGV NNTAENDASQ SAVGYYGDAY QGYIPPPAPG TATAPNSIVG TAQYPYQGVA QPGGYFPPGP GYYFPRGPPP
301: GSSNNTPYGS AATNAPR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.