CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	CDX73744	AT3G51180.1	21798944
AT5G64430.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024295.1-P	Field mustard	nucleus	89.35	98.62
CDX84525	Canola	nucleus	96.03	94.85
AT5G64430.1	Thale cress	nucleus	81.84	76.41
CDY46804	Canola	nucleus	75.57	76.05
CDY31319	Canola	nucleus	42.17	72.4
KRH57272	Soybean	cytosol	12.53	65.22
CDX69896	Canola	nucleus	60.33	61.49
CDY21590	Canola	nucleus	60.13	60.63
VIT_03s0097g00600.t01	Wine grape	nucleus	46.14	47.32
KRH21700	Soybean	nucleus	41.34	45.0
KRH49860	Soybean	nucleus	43.42	43.97
KRH10652	Soybean	cytosol	40.92	43.95
KRH42038	Soybean	cytosol	43.42	43.7
Solyc01g106320.2.1	Tomato	extracellular	44.68	43.41
PGSC0003DMT400008036	Potato	nucleus	44.26	43.18
CDY28543	Canola	plastid	12.53	34.09
CDY48987	Canola	plastid	12.73	34.08
CDX83621	Canola	mitochondrion	12.73	33.7
CDY66304	Canola	cytosol	11.27	32.53
CDY13638	Canola	mitochondrion	12.11	32.04
CDY61217	Canola	cytosol, mitochondrion	11.06	31.93
CDY41501	Canola	cytosol	11.48	29.1
CDY72321	Canola	plastid	10.86	29.05
CDY48129	Canola	cytosol, nucleus, plastid	11.48	28.8
CDY48161	Canola	plastid	10.86	28.42
CDX84387	Canola	nucleus	11.48	28.06
CDY39571	Canola	plastid	10.65	27.87
CDX83177	Canola	mitochondrion	15.45	27.82
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	24.01	27.78
CDY16375	Canola	nucleus	16.28	27.66
CDY21444	Canola	mitochondrion	15.24	27.65
CDY20093	Canola	extracellular, plasma membrane	11.06	27.32
CDX91540	Canola	nucleus	16.08	27.3
Zm00001d051939_P001	Maize	cytosol	30.48	27.14
CDY36115	Canola	cytosol, nucleus, vacuole	14.4	26.64
TraesCS6A01G380500.1	Wheat	cytosol	29.23	26.32
Zm00001d018447_P001	Maize	extracellular	29.85	26.09
EES07730	Sorghum	cytosol	30.69	25.97
TraesCS6B01G419500.1	Wheat	cytosol	26.51	25.76
CDY24410	Canola	cytosol	13.78	25.58
TraesCS6D01G365200.1	Wheat	cytosol	25.89	25.36
GSMUA_Achr1P05710_001	Banana	cytosol	25.47	25.05
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	28.81	25.05
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.24	24.58
CDY62874	Canola	nucleus	18.37	22.17
CDY46377	Canola	nucleus	18.16	21.97
CDX91230	Canola	nucleus	19.83	21.49
CDX97304	Canola	nucleus	19.83	21.4
CDX78676	Canola	plastid	16.7	17.82
CDX70680	Canola	plastid	16.91	17.57
CDX69461	Canola	plastid	17.75	17.53
CDY41073	Canola	nucleus, plastid	22.34	16.96
CDY25942	Canola	nucleus, plastid	22.13	16.88
CDY17690	Canola	nucleus, plastid	25.05	16.57
CDY40994	Canola	cytosol	18.79	15.79
CDY24442	Canola	cytosol	18.79	15.76
CDX92217	Canola	cytosol	18.37	15.02
CDY68695	Canola	nucleus	16.91	14.73
CDY66514	Canola	nucleus	19.21	14.29

Protein Annotations

EnsemblPlants:CDY58263	EnsemblPlantsGene:GSBRNA2T00023330001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564	ProteinID:CDY58263
ProteinID:CDY58263.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EE50B8	UniProt:A0A078IZY4
MapMan:35.2	:	:	:	:	:

Description

BnaAnng15080DBnaAnng15080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZY4]

Coordinates

chrLK033651:+:18524..20170

Molecular Weight (calculated)

52012.7 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.714

Length

479 amino acids

Sequence
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIDFDNPPPW DDQNHHHHQQ TQSYKVKFMC SYNGKIQPRP HDNQLTYVNG ETKILSVDRG IRFPVLASKL SAVCDDGGGG
101: GGDVLFKYQL PGEDLDALIS VTNDDDLEHM MHEYDRLLRA SSKPARMRLF LFPSASSSGG FGSEGSDRDR FVEALNTVRS RPESEKSVTA PPSNADFLFG
201: SEKVVSSPPP PSQPPHEVKL PVPVALEPPL FNDPRVIQQE AVYRRKSEDS GGGYFSPTYA AQNPAPPQPT IPLTNQQAPP VTFWQGSHNN NPGGVFPTTA
301: PGLGLPEQPV YMIPSPSPTP HPASVYHAPP QQPQGVMRPV VTGQVNQGGY YPYREQHQPA YSMTQPPVGV AKGQQQQQQQ PPPPFTSGPP PQPQYSAVPP
401: PQQVVGLADT RAYTQVTYAG AMGKQVYYTE APPPGPPQYH GIGLPVTGGM SGLRTGPDGK LVAMNMAPKV SSQNSDSAV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.