CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	KRH28782	AT3G51180.1	21798944
AT5G64430.1	KRH28783	AT3G51180.1	21798944
AT5G64430.1	KRH69800	AT3G51180.1	21798944
AT5G64430.1	KRH69802	AT3G51180.1	21798944
AT5G64430.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42038	Soybean	cytosol	92.39	91.81
KRH57272	Soybean	cytosol	16.49	84.78
KRH10652	Soybean	cytosol	60.25	63.9
KRH21700	Soybean	nucleus	58.35	62.73
VIT_03s0097g00600.t01	Wine grape	nucleus	50.32	50.96
CDY31319	Canola	nucleus	30.02	50.9
PGSC0003DMT400008036	Potato	nucleus	48.41	46.64
Solyc01g106320.2.1	Tomato	extracellular	48.41	46.45
CDY46804	Canola	nucleus	44.61	44.33
Bra031918.1-P	Field mustard	nucleus	44.4	44.3
CDY58263	Canola	nucleus	43.97	43.42
AT5G64430.1	Thale cress	nucleus	46.93	43.27
CDX84525	Canola	nucleus	43.34	42.27
CDX69896	Canola	nucleus	41.44	41.7
CDY21590	Canola	nucleus	41.86	41.68
Bra009393.1-P	Field mustard	nucleus	41.65	41.56
Bra024295.1-P	Field mustard	nucleus	37.63	41.01
KRH16903	Soybean	nucleus	29.18	38.98
KRH72507	Soybean	cytosol, nucleus, peroxisome	28.54	37.6
AT5G09620.1	Thale cress	nucleus	42.07	37.48
KRH29762	Soybean	plastid	8.88	35.29
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	28.12	32.13
TraesCS6B01G419500.1	Wheat	cytosol	31.08	29.82
KRH69636	Soybean	plastid	13.32	29.72
KRH45586	Soybean	plastid	11.42	29.67
KRH63619	Soybean	plastid	12.05	29.38
TraesCS6A01G380500.1	Wheat	cytosol	32.98	29.32
Zm00001d051939_P001	Maize	cytosol	33.19	29.18
TraesCS6D01G365200.1	Wheat	cytosol	30.02	29.04
KRH03222	Soybean	cytosol	12.05	28.79
Zm00001d018447_P001	Maize	extracellular	33.19	28.65
GSMUA_Achr1P05710_001	Banana	cytosol	29.18	28.34
EES07730	Sorghum	cytosol	33.83	28.27
KRH54323	Soybean	cytosol, nucleus, plastid	10.99	27.96
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	32.56	27.95
KRH74522	Soybean	nucleus	13.11	26.84
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	16.49	26.26
KRH41951	Soybean	nucleus	22.41	25.18
KRH06059	Soybean	nucleus	13.53	23.88
KRH26304	Soybean	nucleus	12.9	23.37
KRH49930	Soybean	nucleus	20.93	23.35
KRH35888	Soybean	nucleus	27.27	18.25
KRH39133	Soybean	cytosol	25.58	18.09
KRH48572	Soybean	cytosol	24.1	17.78
KRG90906	Soybean	nucleus, plastid	26.85	17.61
KRH38173	Soybean	nucleus	23.26	16.87

Protein Annotations

EMBL:ACUP02004645	EnsemblPlants:KRH49860	EnsemblPlantsGene:GLYMA_07G184400	EntrezGene:100820420	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066
PANTHER:PTHR31066:SF2	PFAM:PF00564	ProteinID:KRH49860	ProteinID:KRH49860.1	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0002337EB8	UniProt:I1KL73	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:-:35200296..35202403

Molecular Weight (calculated)

51493.8 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.627

Length

473 amino acids

Sequence
(BLAST)

001: MENYQYPASY PDSGESSPRS REIDFENPPP WDEQQNQNYK AKFMCSYGGK IQPRTHDNQL SYVGGDTKIL AVDRSVKFPA FLSKLAAVCD SAPQDLTFKY
101: QLPGEDLDAL ISVTNDDDLE HMMHEYDRLY RPNLKPVRMR LFLFTLSSSN PNSSFSSERD HFVEALNSGP IPSQPDPIKT PPVTPSNVDY LFGLDKAVAP
201: PPNLPPNFAA VKFHDPVPEP VAPPVEYQSR GSDRVVGSDP NVNPIEIQRQ LQQEMERLQI AENEYRRRSE DGFAAGYAAA AAAGGDYYMQ KVQEKVPPQN
301: AAAYWSEKQF SGEGYQTTVT TAPGGGDQPM YVMAPPGTFY HAPVVRPPAA AQGYYAVQRM GSEGYREQQA VYGGVAPSKA AFSSAGMAKG TAYSEGYGGG
401: VVRPAGVPDN AAYAQVAYDS ASGRQVYYTA QGGMVHAPPP PQYQGVPPQE FRPGGVSVGQ DGKVVNKVNQ GSA

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.