Factsheet for HORVU6Hr1G089280.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G109740.2
HORVU2Hr1G109820.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	HORVU2Hr1G109740.2	AT3G51180.1	21798944
AT5G64430.1	HORVU2Hr1G109820.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G380500.1	Wheat	cytosol	88.38	91.54
TraesCS6D01G365200.1	Wheat	cytosol	81.13	91.41
TraesCS6B01G419500.1	Wheat	cytosol	81.67	91.28
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	34.85	64.65
Zm00001d051939_P001	Maize	cytosol	62.07	63.57
EES07730	Sorghum	cytosol	64.97	63.25
Zm00001d018447_P001	Maize	extracellular	60.07	60.4
KRH57272	Soybean	cytosol	9.44	56.52
VIT_14s0068g01740.t01	Wine grape	cytosol	5.44	41.1
CDY31319	Canola	nucleus	18.33	36.2
VIT_17s0000g07170.t01	Wine grape	cytosol	11.25	35.43
VIT_03s0097g00600.t01	Wine grape	nucleus	29.58	34.9
PGSC0003DMT400016330	Potato	nucleus	28.68	34.42
VIT_18s0001g08010.t01	Wine grape	nucleus	30.67	34.42
VIT_02s0033g00640.t01	Wine grape	cytosol	10.89	34.29
Solyc04g076820.1.1	Tomato	plastid	29.04	33.76
Solyc02g091670.1.1	Tomato	cytosol	16.52	33.7
PGSC0003DMT400078796	Potato	cytosol	16.52	33.7
KRH16903	Soybean	nucleus	21.42	33.33
KRH21700	Soybean	nucleus	26.32	32.95
KRH42038	Soybean	cytosol	28.13	32.56
KRH49860	Soybean	nucleus	27.95	32.56
KRH10652	Soybean	cytosol	25.95	32.06
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	23.96	31.88
Solyc01g106320.2.1	Tomato	extracellular	28.13	31.44
PGSC0003DMT400008036	Potato	nucleus	27.95	31.36
KRH72507	Soybean	cytosol, nucleus, peroxisome	20.15	30.92
CDY46804	Canola	nucleus	25.95	30.04
Bra031918.1-P	Field mustard	nucleus	25.77	29.96
HORVU3Hr1G008310.1	Barley	cytosol	7.62	29.37
Bra024295.1-P	Field mustard	nucleus	23.05	29.26
AT5G64430.1	Thale cress	nucleus	27.22	29.24
CDX84525	Canola	nucleus	25.59	29.07
CDY21590	Canola	nucleus	24.86	28.84
CDY58263	Canola	nucleus	25.05	28.81
CDX69896	Canola	nucleus	24.32	28.51
Bra009393.1-P	Field mustard	nucleus	24.32	28.27
GSMUA_Achr1P05710_001	Banana	cytosol	24.32	27.52
AT5G09620.1	Thale cress	nucleus	24.5	25.42
HORVU6Hr1G055230.3	Barley	cytosol	9.62	22.75
HORVU2Hr1G041600.1	Barley	mitochondrion	12.16	22.19
HORVU4Hr1G026270.1	Barley	cytosol	10.16	16.97
HORVU1Hr1G065470.6	Barley	mitochondrion	12.89	16.36
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	17.6	11.47
HORVU3Hr1G064760.1	Barley	cytosol	3.63	10.31

Protein Annotations

EnsemblPlants:HORVU6Hr1G089280.5	EnsemblPlantsGene:HORVU6Hr1G089280	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	PFAM:PF00564	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI000B46191D	UniProt:A0A287V468	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr6H:-:568647492..568649673

Molecular Weight (calculated)

57809.8 Da

IEP (calculated)

6.869

GRAVY (calculated)

-0.534

Length

551 amino acids

Sequence
(BLAST)

001: YPRPRPRPRS AAMADSGDSS PLSADDAHHH HPDPAATNNT SPPEAAAQAA VPPPVPVPAK VRLMVSYGGR IQPRPHDNQL SYVNGDTKIL SIERPLRFPD
101: FAARLAGLAA ARGDLCVKYQ LPGEDLDALV SVTNDEDLEH LVIEYDRLHL FRAAPGSGGS SRGGSTPRLR VFLFPVQPPP RPPSPPKQQQ QQEQREWYLD
201: LKSASPPPLP QALPSPTQQL NQQMQQQMKQ ETAPVQSPPP AAPMAVPQSV MMASKTGPDY LFGFDYGFMP PPAVKVKDPA GDPPKMRENV PVEIPPKNED
301: RHPNPNPAAD NNTNNAMVSP AVSPAEFPRQ IPDLDKLQLA DNATQQQPPP TPAPAPAPQA APAAPVITAP AAPVAAPLSR NGSDDSLTRA YPPATPTPTA
401: AAEYYVSKFP EKPPVPPPSS APPAAAFLPV PGRYGSVAPG SGADPGPFFF IPAPPHGYYT SANPGGTSYY AVAPHNNGNA NGNGTAPVPA VSSAQGYPQV
501: AYDSNGRAIY YTGLLPQYPS AVNGGGGGMS ASSAVLGTEP SKPVAVKPTV S

Best Arabidopsis Sequence Match ( AT5G09620.1 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.