Factsheet for Solyc04g076820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016330	Potato	nucleus	89.45	92.37
VIT_18s0001g08010.t01	Wine grape	nucleus	61.6	59.47
Solyc01g106320.2.1	Tomato	extracellular	46.2	44.42
Solyc02g091670.1.1	Tomato	cytosol	24.47	42.96
Solyc05g013530.2.1	Tomato	plastid	14.77	31.96
Zm00001d051939_P001	Maize	cytosol	35.87	31.6
Zm00001d018447_P001	Maize	extracellular	36.08	31.2
EES07730	Sorghum	cytosol	36.92	30.92
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	27.0	30.92
TraesCS6A01G380500.1	Wheat	cytosol	33.97	30.26
TraesCS6B01G419500.1	Wheat	cytosol	31.43	30.22
TraesCS6D01G365200.1	Wheat	cytosol	31.01	30.06
Solyc06g071750.2.1	Tomato	plastid	12.24	30.05
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	33.76	29.04
GSMUA_Achr1P05710_001	Banana	cytosol	28.69	27.93
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	17.09	27.27
Solyc02g079360.1.1	Tomato	nucleus	21.31	26.23
Solyc05g008830.2.1	Tomato	nucleus	28.9	21.31
Solyc04g007460.2.1	Tomato	plastid	29.11	20.23
Solyc02g086360.2.1	Tomato	cytosol	20.46	17.41
Solyc03g118870.2.1	Tomato	nucleus	22.78	16.95

Protein Annotations

EnsemblPlants:Solyc04g076820.1.1	EnsemblPlantsGene:Solyc04g076820.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002766051	UniProt:K4BUC0	MapMan:35.2

Description

No Description!

Coordinates

chr4:-:61696378..61697802

Molecular Weight (calculated)

52322.3 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.605

Length

474 amino acids

Sequence
(BLAST)

001: MENFSYSSYP DSVNSSPRSR EIDCENASWD DQPPSSNSNY KVKFMCSYGG KILPRPHDNQ LAYVSGETKI LSVDRNIRFS NLVAKLSSLS DCDVCFKYQL
101: PGEDLDALIS VTNDEDLEHM MLEYDRLYRG TAKPARLRLF LFPLSTPATS TFGSTDSKTE SQWFVDALNS VQLQNLDVNS PTAVSSAPAP ANNPDFLFGL
201: DKGQVQQQQP PPVKVQDPTP SPPVPEVFVK EFTGSDAGSE DRHIIGENVI SPADYQRQIH EMQRLQQHIS NQEQAMYNRK IEESIPRVYP GENYQQKAPP
301: PQQTAVPVTN PASFWPERHT TTGPYPASAV QTEQPVYIVQ TPAGVYQTPA MRPVTSQIGG QAYYGMQRMM PEVYRDQPVY GGVPPQPTIQ QPKMGGVYTS
401: ENMGMVRPHA PPEPTYTQVG YDSVGRQVYY TAPAGVMQHQ MQHPAVAAAA AVAAVDGRQS GGALNPDGRI IGKP

Best Arabidopsis Sequence Match ( AT5G09620.2 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAMYRRKTE DEAGRYFPPT YTQNPAPVTN
301: QQPPVGYWQG NTNNSNIQGN IYTTTSQNLP EQQQQQQQVY MIPAQSQAPG TLYQSVMRPT VQGNQGYYPS PVQRLHHPDA YMEQQNQPGY NVVQPQPTFS
401: GGPQVMTSVG PQVMTSVGPP MGLQEPYSQM GKPVYYTVAG EGMMVQPPPA QPQQQQQQYQ GMGQPVSGMT DLRTGPDGKV AVNMAAPQVS DSV

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.