Factsheet for Solyc05g013530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
extracellular 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	90.41	84.26
VIT_00s0291g00050.t01	Wine grape	plastid	48.4	54.36
KRH29762	Soybean	plastid	28.31	52.1
CDX83621	Canola	mitochondrion	42.47	51.38
CDY28543	Canola	plastid	41.1	51.14
Bra032936.1-P	Field mustard	plastid	41.55	50.84
CDY48987	Canola	plastid	41.1	50.28
Bra025209.1-P	Field mustard	mitochondrion	41.55	50.28
CDY13638	Canola	mitochondrion	41.55	50.28
KRH69636	Soybean	plastid	45.21	46.7
AT1G70640.1	Thale cress	cytosol	36.99	46.55
GSMUA_Achr3P19440_001	Banana	plastid	32.88	44.72
KRH74522	Soybean	nucleus	44.29	41.99
Solyc06g071750.2.1	Tomato	plastid	36.99	41.97
GSMUA_Achr10P...	Banana	cytosol	36.99	39.32
GSMUA_Achr8P16400_001	Banana	plastid	35.62	38.61
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	38.36	38.53
Os11t0444900-01	Rice	cytosol, plastid	36.99	37.5
Os11t0444700-01	Rice	cytosol	36.99	36.16
TraesCS6D01G198500.1	Wheat	plastid	32.42	35.5
TraesCS6B01G245800.1	Wheat	plastid	31.96	35.35
TraesCS6A01G217000.1	Wheat	plastid	32.42	35.32
EES09698	Sorghum	cytosol	37.44	34.75
Zm00001d049157_P001	Maize	plastid	35.16	33.77
GSMUA_Achr6P06660_001	Banana	plastid	36.53	33.06
HORVU6Hr1G055230.3	Barley	cytosol	32.42	30.47
Solyc02g091670.1.1	Tomato	cytosol	23.29	18.89
Solyc04g076820.1.1	Tomato	plastid	31.96	14.77
Solyc02g079360.1.1	Tomato	nucleus	24.2	13.77
Solyc01g106320.2.1	Tomato	extracellular	28.77	12.78
Solyc02g086360.2.1	Tomato	cytosol	26.03	10.23
Solyc03g118870.2.1	Tomato	nucleus	28.31	9.73
Solyc05g008830.2.1	Tomato	nucleus	27.85	9.49
Solyc04g007460.2.1	Tomato	plastid	27.85	8.94

Protein Annotations

EnsemblPlants:Solyc05g013530.2.1	EnsemblPlantsGene:Solyc05g013530.2	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002765ECA	UniProt:K4BY74	MapMan:35.2	:

Description

No Description!

Coordinates

chr5:+:6766537..6768182

Molecular Weight (calculated)

24362.1 Da

IEP (calculated)

8.986

GRAVY (calculated)

-0.384

Length

219 amino acids

Sequence
(BLAST)

001: MVSPSINSHN FPLKFLCSYG GKIIPRQTDG KLRYYGGETR VLSVDRSISF TELLVKLGEM CGSSVSLRCQ LPNEDLDALV SITSDEDLAN LIEEYDRVSK
101: ISSFLKMRAF LYPPKSTKKV VSPTPSIAST SSTNSTTISN PDVTSSPSSF CSTVTSPPTS TRHHDCPRPY KKMARNSLDE TISGRIRHIR TRSSPVMFPI
201: CHEKVTAKIP QYVYDDEIK

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.