Factsheet for TraesCS6D01G198500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G217000.1	Wheat	plastid	97.0	96.52
TraesCS6B01G245800.1	Wheat	plastid	94.5	95.45
HORVU6Hr1G055230.3	Barley	cytosol	92.5	79.4
Os11t0444900-01	Rice	cytosol, plastid	70.0	64.81
Os11t0444700-01	Rice	cytosol	68.0	60.71
GSMUA_Achr3P19440_001	Banana	plastid	45.5	56.52
EES09698	Sorghum	cytosol	65.5	55.51
Zm00001d049157_P001	Maize	plastid	60.0	52.63
GSMUA_Achr10P...	Banana	cytosol	49.5	48.06
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	50.5	46.33
GSMUA_Achr8P16400_001	Banana	plastid	43.5	43.07
KRH29762	Soybean	plastid	25.0	42.02
Bra032936.1-P	Field mustard	plastid	37.5	41.9
CDY66304	Canola	cytosol	34.5	41.57
CDY28543	Canola	plastid	36.5	41.48
CDX83621	Canola	mitochondrion	37.0	40.88
CDY48987	Canola	plastid	36.5	40.78
VIT_00s0291g00050.t01	Wine grape	plastid	39.5	40.51
CDY61217	Canola	cytosol, mitochondrion	33.5	40.36
Bra016197.1-P	Field mustard	mitochondrion	33.5	40.36
KRH45586	Soybean	plastid	36.0	39.56
CDY13638	Canola	mitochondrion	35.5	39.23
Bra025209.1-P	Field mustard	mitochondrion	35.5	39.23
AT1G70640.1	Thale cress	cytosol	32.5	37.36
GSMUA_Achr6P06660_001	Banana	plastid	45.0	37.19
KRH69636	Soybean	plastid	38.0	35.85
CDY20093	Canola	extracellular, plasma membrane	34.0	35.05
KRH74522	Soybean	nucleus	39.5	34.2
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	39.0	33.19
Solyc05g013530.2.1	Tomato	plastid	35.5	32.42
TraesCS4D01G029100.1	Wheat	plastid	25.0	20.33
TraesCS2D01G214600.1	Wheat	plastid	27.5	14.75
TraesCS1D01G267100.1	Wheat	nucleus	26.5	14.48
TraesCS6D01G365200.1	Wheat	cytosol	25.0	10.22
TraesCS3D01G050900.1	Wheat	nucleus	25.5	7.69

Protein Annotations

EnsemblPlants:TraesCS6D01G198500.1	EnsemblPlantsGene:TraesCS6D01G198500	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6D:+:276682568..276683269

Molecular Weight (calculated)

21903.0 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.415

Length

200 amino acids

Sequence
(BLAST)

001: MAGASSWSSS CSCTSSLGSL DDDDVVCVVK PGSPGAAAEG SVKFLCSYGG MILPRHPDGA LRYVGGNNRV LSVDRPLQFH ELQRKLTDMC GWEAVSLRCQ
101: LPTEDLDALV SVTTNDDLGH LLEEYDAASR DRLQPLKIRA FLFPRAKTPP LSPSTPSSRP TPSYVRHQHH HTARPPPARV HSGHRRPHQL LLLHNGSWLQ

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.