Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 63.59 | 60.09 |
| GSMUA_Achr3P19440_001 | Banana | plastid | 43.69 | 55.9 |
| GSMUA_Achr8P16400_001 | Banana | plastid | 53.88 | 54.95 |
| Os11t0444900-01 | Rice | cytosol, plastid | 52.43 | 50.0 |
| TraesCS6D01G198500.1 | Wheat | plastid | 48.06 | 49.5 |
| TraesCS6B01G245800.1 | Wheat | plastid | 47.09 | 48.99 |
| CDY28543 | Canola | plastid | 41.75 | 48.86 |
| Bra032936.1-P | Field mustard | plastid | 42.23 | 48.6 |
| TraesCS6A01G217000.1 | Wheat | plastid | 47.09 | 48.26 |
| Os11t0444700-01 | Rice | cytosol | 52.43 | 48.21 |
| CDX83621 | Canola | mitochondrion | 42.23 | 48.07 |
| CDY48987 | Canola | plastid | 41.75 | 48.04 |
| VIT_00s0291g00050.t01 | Wine grape | plastid | 45.15 | 47.69 |
| KRH29762 | Soybean | plastid | 27.18 | 47.06 |
| CDY13638 | Canola | mitochondrion | 40.78 | 46.41 |
| Bra025209.1-P | Field mustard | mitochondrion | 40.78 | 46.41 |
| CDY66304 | Canola | cytosol | 37.38 | 46.39 |
| KRH45586 | Soybean | plastid | 40.29 | 45.6 |
| CDY61217 | Canola | cytosol, mitochondrion | 36.41 | 45.18 |
| Bra016197.1-P | Field mustard | mitochondrion | 36.41 | 45.18 |
| Zm00001d049157_P001 | Maize | plastid | 48.06 | 43.42 |
| EES09698 | Sorghum | cytosol | 49.03 | 42.8 |
| GSMUA_Achr6P06660_001 | Banana | plastid | 49.03 | 41.74 |
| HORVU6Hr1G055230.3 | Barley | cytosol | 46.12 | 40.77 |
| KRH69636 | Soybean | plastid | 41.75 | 40.57 |
| CDY20093 | Canola | extracellular, plasma membrane | 36.89 | 39.18 |
| AT1G70640.1 | Thale cress | cytosol | 33.01 | 39.08 |
| KRH74522 | Soybean | nucleus | 43.69 | 38.96 |
| PGSC0003DMT400047888 | Potato | cytosol, mitochondrion, plastid | 43.69 | 38.3 |
| Solyc05g013530.2.1 | Tomato | plastid | 39.32 | 36.99 |
| GSMUA_Achr11P... | Banana | plastid | 28.64 | 19.22 |
| GSMUA_Achr4P33650_001 | Banana | mitochondrion | 26.21 | 17.42 |
| GSMUA_Achr3P21900_001 | Banana | nucleus | 30.1 | 16.85 |
| GSMUA_Achr10P... | Banana | nucleus | 25.73 | 15.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.7 | 14.25 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 25.24 | 12.56 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 24.76 | 10.47 |
| GSMUA_Achr8P18320_001 | Banana | nucleus | 25.73 | 10.23 |
| GSMUA_Achr2P07240_001 | Banana | nucleus | 26.7 | 10.0 |
| GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 30.1 | 8.86 |
| GSMUA_Achr1P21240_001 | Banana | nucleus | 25.73 | 8.83 |
| GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 28.64 | 8.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P16870_001 | EnsemblPlants:GSMUA_Achr10T16870_001 | EnsemblPlantsGene:GSMUA_Achr10G16870_001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF1 | PFAM:PF00564 |
| SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI000296D459 | UniProt:M0RIW2 | MapMan:35.2 |
Description
PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G16870_001]
Coordinates
chr10:+:24282083..24282980
Molecular Weight (calculated)
22760.1 Da
IEP (calculated)
8.421
GRAVY (calculated)
-0.350
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGTSASSLS SCASLDDVSV VPTEPVKLLC SYGGKILPRR PDGRLRYVSG HTRVVAVRRS ISFSELQVKL RELCGWGAVS LRCQLPTEDM DALVSVTSDE
101: DLANLVEEYD LASRDRRSSP LKIRAFLLLL RASEPSCRSP VDPVAAAERC VRQASMREKL HSWCEKPDAS AAAAGDLRVH GHQHYHHGHG TPRPCNHLVH
201: HGRHWQ
101: DLANLVEEYD LASRDRRSSP LKIRAFLLLL RASEPSCRSP VDPVAAAERC VRQASMREKL HSWCEKPDAS AAAAGDLRVH GHQHYHHGHG TPRPCNHLVH
201: HGRHWQ
001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ
Arabidopsis Description
Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.