Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P07240_001 | Banana | nucleus | 64.17 | 70.0 |
| HORVU3Hr1G008310.1 | Barley | cytosol | 16.5 | 69.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.5 | 67.62 |
| Zm00001d003965_P001 | Maize | mitochondrion | 12.17 | 66.36 |
| GSMUA_Achr8P18320_001 | Banana | nucleus | 53.83 | 62.36 |
| GSMUA_Achr10P... | Banana | nucleus | 33.5 | 59.47 |
| GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 67.33 | 57.71 |
| GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 55.67 | 47.51 |
| Os01t0139200-01 | Rice | nucleus | 49.67 | 44.41 |
| TraesCS3B01G060500.1 | Wheat | cytosol | 48.83 | 44.26 |
| EES00348 | Sorghum | nucleus | 48.67 | 44.04 |
| Zm00001d039916_P010 | Maize | nucleus | 48.17 | 43.85 |
| Zm00001d008591_P001 | Maize | mitochondrion | 48.17 | 43.46 |
| TraesCS3A01G051800.1 | Wheat | nucleus | 48.5 | 41.34 |
| TraesCS3D01G050900.1 | Wheat | nucleus | 44.83 | 40.57 |
| HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 48.83 | 34.63 |
| GSMUA_Achr4P33650_001 | Banana | mitochondrion | 17.5 | 33.87 |
| Bra010988.1-P | Field mustard | cytosol, nucleus, plasma membrane | 14.67 | 33.85 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 14.33 | 33.2 |
| CDY24410 | Canola | cytosol | 14.0 | 32.56 |
| VIT_17s0000g03180.t01 | Wine grape | nucleus | 33.67 | 31.66 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 14.33 | 31.62 |
| VIT_01s0011g04140.t01 | Wine grape | nucleus | 36.5 | 31.42 |
| Solyc05g008830.2.1 | Tomato | nucleus | 32.5 | 30.33 |
| Solyc03g118870.2.1 | Tomato | nucleus | 31.83 | 29.98 |
| KRH39133 | Soybean | cytosol | 33.33 | 29.9 |
| GSMUA_Achr3P19440_001 | Banana | plastid | 8.0 | 29.81 |
| KRH48572 | Soybean | cytosol | 31.5 | 29.49 |
| PGSC0003DMT400014442 | Potato | nucleus | 33.5 | 29.34 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 35.0 | 29.17 |
| CDY25942 | Canola | nucleus, plastid | 30.5 | 29.14 |
| CDY68695 | Canola | nucleus | 26.67 | 29.09 |
| KRH35888 | Soybean | nucleus | 34.0 | 28.85 |
| PGSC0003DMT400015310 | Potato | nucleus | 31.67 | 28.83 |
| VIT_14s0006g02490.t01 | Wine grape | nucleus | 24.83 | 28.71 |
| CDY41073 | Canola | nucleus, plastid | 30.17 | 28.68 |
| Bra017462.1-P | Field mustard | cytosol, plastid | 30.67 | 28.66 |
| KRG90906 | Soybean | nucleus, plastid | 34.0 | 28.29 |
| Bra022297.1-P | Field mustard | nucleus | 27.0 | 28.27 |
| Solyc04g007460.2.1 | Tomato | plastid | 32.0 | 28.15 |
| Bra024899.1-P | Field mustard | nucleus, plastid | 34.0 | 28.1 |
| CDY40994 | Canola | cytosol | 26.5 | 27.89 |
| CDY24442 | Canola | cytosol | 26.5 | 27.85 |
| CDY17690 | Canola | nucleus, plastid | 33.5 | 27.76 |
| CDX92217 | Canola | cytosol | 27.0 | 27.65 |
| Solyc02g086360.2.1 | Tomato | cytosol | 25.5 | 27.47 |
| Bra022296.1-P | Field mustard | cytosol | 27.0 | 27.36 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 30.33 | 27.33 |
| KRH38173 | Soybean | nucleus | 29.67 | 27.3 |
| PGSC0003DMT400067817 | Potato | cytosol | 25.17 | 27.11 |
| Bra037596.1-P | Field mustard | nucleus | 29.0 | 27.06 |
| CDY66514 | Canola | nucleus | 29.0 | 27.02 |
| Bra006344.1-P | Field mustard | plastid | 15.67 | 26.48 |
| GSMUA_Achr10P... | Banana | cytosol | 8.83 | 25.73 |
| AT5G16220.1 | Thale cress | plastid | 19.67 | 24.79 |
| CDX70680 | Canola | plastid | 19.0 | 24.73 |
| CDX78676 | Canola | plastid | 18.5 | 24.72 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 8.83 | 24.31 |
| GSMUA_Achr8P16400_001 | Banana | plastid | 8.17 | 24.26 |
| Bra008633.1-P | Field mustard | plastid | 19.0 | 23.51 |
| CDX69461 | Canola | plastid | 19.0 | 23.51 |
| GSMUA_Achr6P06660_001 | Banana | plastid | 8.33 | 20.66 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 13.33 | 19.32 |
| GSMUA_Achr11P... | Banana | plastid | 9.67 | 18.89 |
| GSMUA_Achr3P21900_001 | Banana | nucleus | 11.5 | 18.75 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 13.83 | 17.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P21240_001 | EnsemblPlants:GSMUA_Achr1T21240_001 | EnsemblPlantsGene:GSMUA_Achr1G21240_001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000270 | InterPro:PB1_dom | ncoils:Coil | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF27 |
| PFAM:PF00564 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0002956BA0 | UniProt:M0S1T2 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G21240_001]
Coordinates
chr1:+:16000275..16002328
Molecular Weight (calculated)
64151.1 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.383
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSYGGRIVP RPTEKSLCYL GGETRIVVVD RHSALADICA KLSRTLLGGR TFSLKYQLPS EDLDSLISVA TDEDLDNMID EYDRVLATSS AGAGGGCSSG
101: SSRLRLFLFP SKPEMSPASS IGTLLDDSKS ETWFVDALNS VMGGMEVDGL PRGLSSDSAS VNCLLGLEEG SSVHSRSGAA IAACSAHSDP PDQLALPSPD
201: SSGKLARHGH DLYSVPDSPM LDSTSSFGSA SSAPSLSNLP PIRVRPDDRL CDPGIAGLDD HFAHINLSAS VATGGQRLQD DFKEPSYAPQ LQLHPLIPFS
301: ASSASTSPTE YRRIGSASDD EKSDRGAIWK PQRQPPKPTE IDASISDPVS RAMYLNATSD QKRELSVFSD PSYGVPIPAT NAASYRLPSM QPERFQQQQL
401: YPQLQLQQQY IPGNPHYIHH PSAGGVIPVP SYFPIAAHTI QQSPQAHPHD PQIPLYYYPV QPTPSYNLAA VQPGMGDPNS LTSAAKPPMA VPQVPAKPEL
501: PASLYRTAAL QPQLIHMAAD QPHSYAGMGY RVVQHHHVSQ SPATVANHGY EFAADQSRPQ MYHSQATPSL ASTPQCQPPT SGIVIIDAMA QADTKATRAS
101: SSRLRLFLFP SKPEMSPASS IGTLLDDSKS ETWFVDALNS VMGGMEVDGL PRGLSSDSAS VNCLLGLEEG SSVHSRSGAA IAACSAHSDP PDQLALPSPD
201: SSGKLARHGH DLYSVPDSPM LDSTSSFGSA SSAPSLSNLP PIRVRPDDRL CDPGIAGLDD HFAHINLSAS VATGGQRLQD DFKEPSYAPQ LQLHPLIPFS
301: ASSASTSPTE YRRIGSASDD EKSDRGAIWK PQRQPPKPTE IDASISDPVS RAMYLNATSD QKRELSVFSD PSYGVPIPAT NAASYRLPSM QPERFQQQQL
401: YPQLQLQQQY IPGNPHYIHH PSAGGVIPVP SYFPIAAHTI QQSPQAHPHD PQIPLYYYPV QPTPSYNLAA VQPGMGDPNS LTSAAKPPMA VPQVPAKPEL
501: PASLYRTAAL QPQLIHMAAD QPHSYAGMGY RVVQHHHVSQ SPATVANHGY EFAADQSRPQ MYHSQATPSL ASTPQCQPPT SGIVIIDAMA QADTKATRAS
001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.