Factsheet for GSMUA_Achr11P13400_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P19900_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	46.43	84.2
GSMUA_Achr2P07240_001	Banana	nucleus	56.43	71.82
Zm00001d003965_P001	Maize	mitochondrion	11.14	70.91
HORVU3Hr1G008310.1	Barley	cytosol	14.43	70.63
GSMUA_Achr1P21240_001	Banana	nucleus	57.71	67.33
GSMUA_Achr8P18320_001	Banana	nucleus	45.71	61.78
GSMUA_Achr10P...	Banana	nucleus	29.71	61.54
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	55.0	54.77
EES00348	Sorghum	nucleus	49.0	51.73
Zm00001d039916_P010	Maize	nucleus	48.43	51.44
Os01t0139200-01	Rice	nucleus	49.0	51.12
Zm00001d008591_P001	Maize	mitochondrion	47.86	50.38
TraesCS3D01G050900.1	Wheat	nucleus	44.0	46.46
TraesCS3A01G051800.1	Wheat	nucleus	45.86	45.6
TraesCS3B01G060500.1	Wheat	cytosol	42.14	44.56
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	49.71	41.13
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	14.29	38.46
CDY36115	Canola	cytosol, nucleus, vacuole	14.14	38.22
CDY24410	Canola	cytosol	13.71	37.21
VIT_01s0011g04140.t01	Wine grape	nucleus	36.71	36.87
VIT_17s0000g03180.t01	Wine grape	nucleus	33.0	36.21
KRH35888	Soybean	nucleus	35.86	35.5
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	13.57	34.93
KRG90906	Soybean	nucleus, plastid	35.71	34.67
GSMUA_Achr4P33650_001	Banana	mitochondrion	15.14	34.19
Solyc05g008830.2.1	Tomato	nucleus	31.14	33.9
CDY25942	Canola	nucleus, plastid	30.29	33.76
KRH39133	Soybean	cytosol	32.14	33.63
GSMUA_Achr3P19440_001	Banana	plastid	7.71	33.54
PGSC0003DMT400015310	Potato	nucleus	31.57	33.54
KRH48572	Soybean	cytosol	30.57	33.39
Bra017462.1-P	Field mustard	cytosol, plastid	30.57	33.33
CDY41073	Canola	nucleus, plastid	30.0	33.28
Solyc03g118870.2.1	Tomato	nucleus	30.0	32.97
CDY68695	Canola	nucleus	25.86	32.91
PGSC0003DMT400014442	Potato	nucleus	32.0	32.7
Solyc04g007460.2.1	Tomato	plastid	31.71	32.55
KRH38173	Soybean	nucleus	30.29	32.52
AT2G01190.1	Thale cress	nucleus, plastid	33.43	32.5
Bra024899.1-P	Field mustard	nucleus, plastid	33.43	32.23
CDY17690	Canola	nucleus, plastid	32.86	31.77
Bra022297.1-P	Field mustard	nucleus	26.0	31.76
CDX92217	Canola	cytosol	26.43	31.57
Bra022296.1-P	Field mustard	cytosol	26.43	31.25
VIT_14s0006g02490.t01	Wine grape	nucleus	23.14	31.21
CDY40994	Canola	cytosol	25.29	31.05
CDY24442	Canola	cytosol	25.29	31.0
GSMUA_Achr10P...	Banana	cytosol	8.86	30.1
AT3G18230.1	Thale cress	nucleus, plastid	28.43	29.88
Bra037596.1-P	Field mustard	nucleus	27.43	29.86
CDY66514	Canola	nucleus	27.43	29.81
Solyc02g086360.2.1	Tomato	cytosol	23.71	29.8
PGSC0003DMT400067817	Potato	cytosol	23.43	29.44
Bra006344.1-P	Field mustard	plastid	14.86	29.3
GSMUA_Achr8P16400_001	Banana	plastid	8.14	28.22
CDX70680	Canola	plastid	18.14	27.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	8.57	27.52
CDX78676	Canola	plastid	17.57	27.39
AT5G16220.1	Thale cress	plastid	18.57	27.31
Bra008633.1-P	Field mustard	plastid	18.43	26.6
CDX69461	Canola	plastid	18.43	26.6
GSMUA_Achr6P06660_001	Banana	plastid	8.14	23.55
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	12.14	20.53
GSMUA_Achr11P...	Banana	plastid	8.71	19.87
GSMUA_Achr3P21900_001	Banana	nucleus	10.29	19.57
GSMUA_Achr1P05710_001	Banana	cytosol	12.71	18.28

Protein Annotations

EnsemblPlants:GSMUA_Achr11P13400_001	EnsemblPlants:GSMUA_Achr11T13400_001	EnsemblPlantsGene:GSMUA_Achr11G13400_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
PFscan:PS51745	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000295E7AC	UniProt:M0RRX0
MapMan:35.2	:	:	:	:	:

Description

Putative PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G13400_001]

Coordinates

chr11:+:13984962..13988076

Molecular Weight (calculated)

75098.9 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.414

Length

700 amino acids

Sequence
(BLAST)

001: MNILGIIVKR FFFLIIYLII SCTSKAKVRE YKALRYPASF SCSARPSQNQ PHLRSVSKSC SLDPMMETAA AAGGGGPGYA DSVESSPRSR GGDSWDEPAF
101: PSAAAGRLRL MCSYGGRIVP RPTDKSLCYL GGETRIVVVD RHSSLPDLSA KLSRNLLGGR PFSLKYQLPN EDLDSLISVA TDEDLDNMIE EYDRILAAAA
201: GASGGSNRSS RLRLFLFPSK SESSPTSSIG SLLDDSKSET WFVDALNSAM GGMGIDGLPR GLSSDSASVN CLLGLEDDSS VHSHGGSAIA SSGLARHSQD
301: VHSIPDSPML DTTSSFGSAS SVPSLSNLPP IRVRPDDRPS DPRIAGLDDH FAQMNLSSGT VAAGGGQRAD DNFKEPSYAP ELQPSPSIPP SASSASTLTI
401: SPTENPSKAF SSDDEKSDHG GVRKPLQHRP PDLTQIEALS YDSGSRTMYL NATSDPKREL PVSSDPSNRI PILATDAAGY QLPSLQPKQF HEQQLHPQFH
501: HQQQQQQQQY IPANPHYIHH PGTGGVIPVP SYFPVATHTI QQPPQAHAYD PQMPLYYYPV RQTPSYDLAA MQPGLGDPNL ISSAAKPALP VPRVPAKSEL
601: TANLYRTNAP SPATALQPPL IHVAADQAHP YATGMGYHVV QPHHISQSPA TMVNYGYDFA GDRAHPQMYY SQATPLPVSS GVQRDAQSTY VVVAPKTVLT

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.