Factsheet for VIT_17s0000g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003965_P001	Maize	mitochondrion	9.72	56.36
HORVU3Hr1G008310.1	Barley	cytosol	11.76	52.45
Solyc03g118870.2.1	Tomato	nucleus	48.43	48.51
PGSC0003DMT400014442	Potato	nucleus	52.04	48.47
KRH48572	Soybean	cytosol	48.59	48.36
GSMUA_AchrUn_...	Banana	nucleus	28.84	47.67
KRH39133	Soybean	cytosol	49.06	46.79
VIT_01s0011g04140.t01	Wine grape	nucleus	50.0	45.77
GSMUA_Achr10P...	Banana	nucleus	22.57	42.6
CDY68695	Canola	nucleus	34.33	39.82
VIT_14s0068g01740.t01	Wine grape	cytosol	4.55	39.73
VIT_14s0006g02490.t01	Wine grape	nucleus	32.13	39.5
CDY40994	Canola	cytosol	35.27	39.47
CDY24442	Canola	cytosol	35.27	39.4
Bra022297.1-P	Field mustard	nucleus	34.64	38.57
GSMUA_Achr8P18320_001	Banana	nucleus	31.03	38.22
GSMUA_Achr2P07240_001	Banana	nucleus	32.76	38.0
Bra022296.1-P	Field mustard	cytosol	34.95	37.67
Bra037596.1-P	Field mustard	nucleus	37.93	37.64
CDY66514	Canola	nucleus	37.93	37.58
CDX92217	Canola	cytosol	34.48	37.54
AT3G18230.1	Thale cress	nucleus, plastid	38.87	37.24
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	15.83	35.31
Zm00001d039916_P010	Maize	nucleus	35.74	34.6
EES00348	Sorghum	nucleus	35.42	34.09
Zm00001d008591_P001	Maize	mitochondrion	35.27	33.83
GSMUA_Achr1P21240_001	Banana	nucleus	31.66	33.67
Os01t0139200-01	Rice	nucleus	34.95	33.23
VIT_17s0000g07170.t01	Wine grape	cytosol	9.09	33.14
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	36.21	33.0
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	7.99	32.08
TraesCS3D01G050900.1	Wheat	nucleus	33.23	31.98
TraesCS3A01G051800.1	Wheat	nucleus	34.95	31.68
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	34.01	30.87
VIT_02s0033g00640.t01	Wine grape	cytosol	8.46	30.86
TraesCS3B01G060500.1	Wheat	cytosol	31.19	30.06
VIT_00s0291g00050.t01	Wine grape	plastid	9.09	29.74
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	34.95	26.36
VIT_03s0097g00600.t01	Wine grape	nucleus	18.18	24.84
VIT_18s0001g08010.t01	Wine grape	nucleus	18.81	24.44
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	10.66	17.57

Protein Annotations

ArrayExpress:VIT_17s0000g03180	EMBL:FN594950	EnsemblPlants:VIT_17s0000g03180.t01	EnsemblPlantsGene:VIT_17s0000g03180	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27
PFAM:PF00564	ProteinID:CBI15501	ProteinID:CBI15501.3	SEG:seg	SMART:SM00666	SUPFAM:SSF54277
UniParc:UPI0001BE0A78	UniProt:D7SJ40	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr17:+:3071407..3074093

Molecular Weight (calculated)

69504.7 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.463

Length

638 amino acids

Sequence
(BLAST)

001: MDPSPPPLPP HPITTMQLNY PESADSSPRK ADTWEEPLPP VPGARLRLMC SFGGHIIPRP HDKTLCYMGG ETRMIVVDRS SSLADLSSRI SRTLLNGRGF
101: TLKYQLPNED LDNLISVTTN EDLDNMIEEY DRITSASPLK SSRLRLFIFL AKPETAASMG SLLDDAKSET WFVDALNGAG LLPRGLSDSA AIDCFLDRDA
201: SGDSCTHVEA QTDSLCNTKH GKSGQEVHSV PSSPMVETAS SFGSSSSSPS MANLPPIRVR AEDGGLRLHD HKVGLEEEFA YMSTNPQTVV QKQDEGFVVL
301: SAPPPLPSSA IVGGTAAAAA AESGENQSRG FSDDERSDQG VRIRFRKPPL PLQPVQRRLD DGFNLPSPDS KHAYLDPVHV TTKDNKPPIP IDPKKDTPDM
401: SSQIQLQQVQ DSSYILPSQA ADLQQQQPVV HASMHYIHHP PTGSAVPISS YYPMYAPTPQ NQQQLHHQMD QQYPVYLLPI TQPQTYNLPL QSNVATDSTA
501: VAPGRALTPP TPAMVTPSGL YKEISTPPIY PTKPEMAASV YRTVGTATPP LVQVPSNQFH QQQQYVGFSQ LHHPPQSIAA AAPNYAFEYA HPAQDQAYYT
601: HHSVAPLPPQ YQTLTSTAAV ALSEASAHYS KCMVIFAK

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.