Factsheet for Solyc03g118870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014442	Potato	nucleus	96.08	89.34
Zm00001d003965_P001	Maize	mitochondrion	9.58	55.45
HORVU3Hr1G008310.1	Barley	cytosol	11.3	50.35
VIT_17s0000g03180.t01	Wine grape	nucleus	48.51	48.43
GSMUA_AchrUn_...	Banana	nucleus	26.69	44.04
KRH48572	Soybean	cytosol	40.97	40.72
KRH39133	Soybean	cytosol	42.7	40.66
CDY68695	Canola	nucleus	34.85	40.36
GSMUA_Achr10P...	Banana	nucleus	21.19	39.94
CDY40994	Canola	cytosol	33.91	37.89
CDY24442	Canola	cytosol	33.91	37.83
Bra022297.1-P	Field mustard	nucleus	33.44	37.17
GSMUA_Achr8P18320_001	Banana	nucleus	29.98	36.87
CDX92217	Canola	cytosol	33.75	36.69
Solyc04g007460.2.1	Tomato	plastid	39.25	36.66
Bra022296.1-P	Field mustard	cytosol	33.75	36.32
Bra037596.1-P	Field mustard	nucleus	35.95	35.61
Solyc05g008830.2.1	Tomato	nucleus	35.95	35.61
AT3G18230.1	Thale cress	nucleus, plastid	37.21	35.59
CDY66514	Canola	nucleus	35.95	35.56
GSMUA_Achr2P07240_001	Banana	nucleus	30.14	34.91
GSMUA_Achr1P21240_001	Banana	nucleus	29.98	31.83
Zm00001d039916_P010	Maize	nucleus	32.5	31.41
EES00348	Sorghum	nucleus	32.34	31.07
Zm00001d008591_P001	Maize	mitochondrion	32.03	30.68
Os01t0139200-01	Rice	nucleus	32.18	30.55
Solyc02g086360.2.1	Tomato	cytosol	26.69	30.52
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	32.97	30.0
TraesCS3D01G050900.1	Wheat	nucleus	30.46	29.26
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	31.87	28.88
TraesCS3A01G051800.1	Wheat	nucleus	31.55	28.55
Solyc06g071750.2.1	Tomato	plastid	8.63	28.5
Solyc05g013530.2.1	Tomato	plastid	9.73	28.31
Solyc02g079360.1.1	Tomato	nucleus	16.64	27.53
TraesCS3B01G060500.1	Wheat	cytosol	28.57	27.49
Solyc02g091670.1.1	Tomato	cytosol	10.2	24.07
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	31.4	23.64
Solyc04g076820.1.1	Tomato	plastid	16.95	22.78
Solyc01g106320.2.1	Tomato	extracellular	16.64	21.5

Protein Annotations

EnsemblPlants:Solyc03g118870.2.1	EnsemblPlantsGene:Solyc03g118870.2	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00027661AB	UniProt:K4BM36	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:-:67654529..67656944

Molecular Weight (calculated)

69263.8 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.524

Length

637 amino acids

Sequence
(BLAST)

001: MDPPPIPSHI TATPIGTIAQ QNYSDSASSS PRSRQNDTWE QESLALVSGA KLRLICSYGG HIIPRPHDKS LCYVGGDTRI VVAERQSSLA DLQSRLSHTL
101: LNGRRFSLKY QLPNEELDSL VSVTTDEDLD NMIEEYDRAM SASPLKPSRL RLFLFLAKPE TAASMGCLLA DSKSETWFVD ALNNASMLSR GLSDSAAEGN
201: FLELERIPKS DSGVNLDQAQ NESLAANNRQ MAKNVIQEVQ STMPDSPMVE TTSSFESSVS SPSMPNLPQI KVRAENGQMN ARFHDQMPGL DEQFSNMNVA
301: SNAQNLEDAY LHLAAQAATP PLPTVIGGAA VTSSATLVNA APATGEHHGR VISDDEKSDH GAPSGRRKPP LPLQPIQRKV GDAYSLPSPD SKHAGGYNLQ
401: SPDSVASDSS IASGTSFSKH TVYQDAPPAT GRETRMHPAV MDYNSQIQMQ QVQDSVVMQV PQQNQQQFVP ANAHYIQHTA TGPVAAPSYY QMYAPPTQQP
501: LHQQMDQQYQ MYYVPVPQTQ QYNLTVQSNV ADASAVASNQ QLTPPNPTTV SSSAVFKEAL PPIYPARTIQ SAKPEMPANV YITSTPANQT VVQVPSSQYH
601: QQYYSLSQVP PPSHQMATVP NGAANYGYEY SHPVTKL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.