Factsheet for Solyc02g079360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057688	Potato	nucleus	95.32	88.22
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	41.04	55.24
KRH41951	Soybean	nucleus	53.51	48.93
KRH49930	Soybean	nucleus	52.47	47.64
CDY46377	Canola	nucleus	44.16	42.93
CDY62874	Canola	nucleus	44.16	42.82
GSMUA_Achr4P33650_001	Banana	mitochondrion	34.29	42.58
Bra018513.1-P	Field mustard	nucleus	48.57	42.12
CDX97304	Canola	nucleus	48.57	42.12
CDX91230	Canola	nucleus	48.31	42.08
Bra029559.1-P	Field mustard	nucleus	42.08	41.01
AT4G05150.1	Thale cress	nucleus	48.83	39.41
HORVU2Hr1G041600.1	Barley	mitochondrion	25.97	33.11
TraesCS2A01G207800.1	Wheat	plastid	28.83	29.92
TraesCS2D01G214600.1	Wheat	plastid	28.57	29.49
TraesCS2B01G234400.1	Wheat	plastid	28.31	28.76
Zm00001d021746_P001	Maize	plastid	27.53	27.68
Zm00001d006574_P001	Maize	plastid	26.75	27.47
EER99518	Sorghum	plastid	27.79	27.3
Os07t0556300-01	Rice	endoplasmic reticulum, vacuole	29.09	26.48
Solyc06g071750.2.1	Tomato	plastid	12.99	25.91
Solyc02g091670.1.1	Tomato	cytosol	17.4	24.81
Solyc05g013530.2.1	Tomato	plastid	13.77	24.2
Solyc04g076820.1.1	Tomato	plastid	26.23	21.31
Solyc05g008830.2.1	Tomato	nucleus	31.95	19.13
Solyc01g106320.2.1	Tomato	extracellular	23.64	18.46
Solyc04g007460.2.1	Tomato	plastid	32.21	18.18
Solyc02g086360.2.1	Tomato	cytosol	26.23	18.13
KXG37356	Sorghum	nucleus	15.84	17.58
Solyc03g118870.2.1	Tomato	nucleus	27.53	16.64

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046777	InterPro:IPR000270	UniProt:K4B9G0
InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF4	SMART:SM00666	SUPFAM:SSF54277
EnsemblPlantsGene:Solyc02g079360.1	EnsemblPlants:Solyc02g079360.1.1	UniParc:UPI0002768878	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:43955346..43956503

Molecular Weight (calculated)

41866.5 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.435

Length

385 amino acids

Sequence
(BLAST)

001: MYDDTTATQP RARFMCSFGG KIVLRPHDNQ LRYVGGDTRI VAVNRHTTFA ALLGKLSKLI GYPNINIKYQ LPNEELDALI TVTTDEDLEN MMEEYDRLTQ
101: NQKSARLRLF LFPNDSGSRA STISSILDGS SKREQWFVDA LNGGAGPGLE RGRSEVSSIV SEVPDYLFGL DNSDDPPRES KFVKNKIISE PGSPAPPIVS
201: SPYCSISSSS MTPTAAMTVM PDLPPVKTKL DKPNPTAESR ETPVASATET GERTVQQQQQ SYPSSPLWHY PAPPVQTIPV YYVPGSVQPG NIPVQPITLR
301: APYIHPFPVP PNQLPVGYPP ASSMGQVYSG LRPVMSVDPN ELRVVTEGMN YYAVRNSGVV PGYGGPVSEE MQGSGGDGMS GRVSQ

Best Arabidopsis Sequence Match ( AT4G05150.1 )
(BLAST)

001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS

Arabidopsis Description

AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.