Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018513.1-P | Field mustard | nucleus | 79.66 | 85.59 |
| CDX97304 | Canola | nucleus | 79.66 | 85.59 |
| CDY62874 | Canola | nucleus | 71.07 | 85.39 |
| CDX91230 | Canola | nucleus | 79.04 | 85.29 |
| CDY46377 | Canola | nucleus | 70.02 | 84.34 |
| Bra029559.1-P | Field mustard | nucleus | 68.34 | 82.53 |
| VIT_00s0203g00140.t01 | Wine grape | cytosol, nucleus, plastid | 33.54 | 55.94 |
| KRH41951 | Soybean | nucleus | 44.65 | 50.59 |
| KRH49930 | Soybean | nucleus | 44.03 | 49.53 |
| Solyc02g079360.1.1 | Tomato | nucleus | 39.41 | 48.83 |
| PGSC0003DMT400057688 | Potato | nucleus | 41.72 | 47.84 |
| GSMUA_Achr4P33650_001 | Banana | mitochondrion | 25.16 | 38.71 |
| TraesCS2A01G207800.1 | Wheat | plastid | 24.74 | 31.81 |
| HORVU2Hr1G041600.1 | Barley | mitochondrion | 20.13 | 31.79 |
| TraesCS2D01G214600.1 | Wheat | plastid | 24.53 | 31.37 |
| AT1G70640.1 | Thale cress | cytosol | 11.32 | 31.03 |
| TraesCS2B01G234400.1 | Wheat | plastid | 24.11 | 30.34 |
| Zm00001d006574_P001 | Maize | plastid | 22.85 | 29.07 |
| EER99518 | Sorghum | plastid | 23.69 | 28.83 |
| Zm00001d021746_P001 | Maize | plastid | 22.85 | 28.46 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 10.69 | 28.33 |
| Os07t0556300-01 | Rice | endoplasmic reticulum, vacuole | 23.9 | 26.95 |
| AT5G63130.2 | Thale cress | nucleus | 10.27 | 25.52 |
| AT5G49920.1 | Thale cress | nucleus | 14.47 | 23.96 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 13.0 | 22.79 |
| AT5G16220.1 | Thale cress | plastid | 19.71 | 19.75 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 29.56 | 19.58 |
| KXG37356 | Sorghum | nucleus | 13.63 | 18.73 |
| AT5G64430.1 | Thale cress | nucleus | 20.13 | 18.71 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 25.79 | 18.47 |
| AT5G09620.1 | Thale cress | nucleus | 19.92 | 17.89 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:825863 | ProteinID:AEE82485.1 | ArrayExpress:AT4G05150 | EnsemblPlantsGene:AT4G05150 |
| RefSeq:AT4G05150 | TAIR:AT4G05150 | RefSeq:AT4G05150-TAIR-G | EnsemblPlants:AT4G05150.1 | TAIR:AT4G05150.1 | EMBL:AY054238 |
| Unigene:At.4069 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046777 | InterPro:IPR000270 | RefSeq:NP_567290.1 | InterPro:PB1_dom | PFAM:PF00564 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF4 | UniProt:Q940N7 | SMART:SM00666 |
| SUPFAM:SSF54277 | UniParc:UPI000009FB1F | SEG:seg | : | : | : |
Description
AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
Coordinates
chr4:+:2660156..2662908
Molecular Weight (calculated)
53065.2 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.788
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.