Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21444 | Canola | mitochondrion | 70.83 | 77.27 |
| CDX83177 | Canola | mitochondrion | 70.14 | 75.94 |
| CDX91540 | Canola | nucleus | 73.96 | 75.53 |
| Bra000599.1-P | Field mustard | mitochondrion | 69.44 | 75.47 |
| CDY16375 | Canola | nucleus | 73.61 | 75.18 |
| Bra022508.1-P | Field mustard | nucleus | 73.61 | 75.18 |
| KRH06059 | Soybean | nucleus | 43.4 | 46.64 |
| KRH26304 | Soybean | nucleus | 41.67 | 45.98 |
| PGSC0003DMT400097584 | Potato | nucleus | 45.83 | 35.87 |
| AT1G70640.1 | Thale cress | cytosol | 20.83 | 34.48 |
| VIT_12s0035g01050.t01 | Wine grape | extracellular, golgi | 43.75 | 32.56 |
| AT5G63130.2 | Thale cress | nucleus | 21.53 | 32.29 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 20.14 | 32.22 |
| GSMUA_Achr3P21900_001 | Banana | nucleus | 32.64 | 25.54 |
| GSMUA_Achr11P... | Banana | plastid | 26.04 | 24.43 |
| TraesCS1A01G266900.1 | Wheat | nucleus | 29.51 | 23.29 |
| TraesCS1D01G267100.1 | Wheat | nucleus | 29.51 | 23.22 |
| Os05t0427100-01 | Rice | cytosol | 29.51 | 23.22 |
| OQU78054 | Sorghum | cytosol | 29.51 | 23.22 |
| Zm00001d010214_P003 | Maize | cytosol | 29.86 | 21.94 |
| TraesCS1B01G277800.1 | Wheat | cytosol, mitochondrion | 29.51 | 20.94 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 18.75 | 19.85 |
| HORVU1Hr1G065470.6 | Barley | mitochondrion | 29.51 | 19.59 |
| AT5G64430.1 | Thale cress | nucleus | 26.39 | 14.81 |
| AT4G05150.1 | Thale cress | nucleus | 23.96 | 14.47 |
| AT5G09620.1 | Thale cress | nucleus | 25.35 | 13.75 |
| AT5G16220.1 | Thale cress | plastid | 19.44 | 11.76 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 24.65 | 10.66 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 25.0 | 10.0 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:835055 | ProteinID:AED95871.1 | ArrayExpress:AT5G49920 | EnsemblPlantsGene:AT5G49920 |
| RefSeq:AT5G49920 | TAIR:AT5G49920 | RefSeq:AT5G49920-TAIR-G | EnsemblPlants:AT5G49920.1 | TAIR:AT5G49920.1 | Unigene:At.70293 |
| ProteinID:BAA97013.1 | EMBL:BT020324 | EMBL:BT020557 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | RefSeq:NP_199803.1 | InterPro:PB1_dom | PFAM:PF00564 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF13 |
| UniProt:Q9LTX8 | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI00000AB480 | SEG:seg | : |
Description
At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
Coordinates
chr5:-:20306409..20307943
Molecular Weight (calculated)
32489.3 Da
IEP (calculated)
8.819
GRAVY (calculated)
-0.689
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.