Factsheet for TraesCS1A01G266900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G267100.1	Wheat	nucleus	96.99	96.72
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	96.99	87.19
HORVU1Hr1G065470.6	Barley	mitochondrion	92.05	77.42
Os05t0427100-01	Rice	cytosol	65.48	65.3
OQU78054	Sorghum	cytosol	59.73	59.56
Zm00001d010214_P003	Maize	cytosol	58.63	54.59
KRH06059	Soybean	nucleus	23.84	32.46
CDY21444	Canola	mitochondrion	23.29	32.2
KRH26304	Soybean	nucleus	23.01	32.18
Bra000599.1-P	Field mustard	mitochondrion	23.29	32.08
CDX83177	Canola	mitochondrion	23.29	31.95
GSMUA_Achr11P...	Banana	plastid	25.75	30.62
Bra022508.1-P	Field mustard	nucleus	23.01	29.79
CDX91540	Canola	nucleus	23.01	29.79
CDY16375	Canola	nucleus	23.01	29.79
AT5G49920.1	Thale cress	nucleus	23.29	29.51
GSMUA_Achr3P21900_001	Banana	nucleus	29.32	29.08
TraesCS6A01G217000.1	Wheat	plastid	14.52	26.37
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	27.12	25.58
PGSC0003DMT400097584	Potato	nucleus	25.75	25.54
TraesCS4A01G281600.1	Wheat	plastid	16.44	24.19
TraesCS2A01G207800.1	Wheat	plastid	16.16	15.9
TraesCS6A01G380500.1	Wheat	cytosol	19.45	13.35
TraesCS3A01G051800.1	Wheat	nucleus	19.73	10.23

Protein Annotations

EnsemblPlants:TraesCS1A01G266900.1	EnsemblPlantsGene:TraesCS1A01G266900	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF8	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1A:+:462335071..462336245

Molecular Weight (calculated)

38733.5 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.470

Length

365 amino acids

Sequence
(BLAST)

001: MEHAMPTMAA ESEGATTDDD VHLSPTSVSS GGGGGGGGPP SVRFKILCSF GGRIMPRPSD GALKYIGGDT RVLAVPRSIR FRDLKKKVEE MFKTDVAAIK
101: YQLLSSDDLD VLVSVTCDED LAHMLDEYDR FEAKRSPSAS PRFRVYVFVP HQVSASSVAA AVPAPVASSR HVSYARNQPH YHPHHHHLQP ERERYVASVP
201: GTPDGSPPYP DQPNGVASAG NSPRANIVEQ AVFRGGMQRV RSSPNLGGLN AALLPFHDHA GDSPGGLAGY MSGSPVHPGG GHIFSQGSYN PYRSPQPQYS
301: PAPVPVPHHA GVAGRYDARG GYARGGSYMA APLAPALRSG RPVTRSGGAP YSEMQAPKKT ATIWD

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.