Factsheet for TraesCS3A01G051800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS5B01G340700.1
TraesCS6A01G412800.1
TraesCS6B01G462100.1
TraesCS6D01G397000.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7D01G056400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	19.74	97.2
TraesCS3B01G060500.1	Wheat	cytosol	90.77	96.53
TraesCS3D01G050900.1	Wheat	nucleus	89.06	94.57
Zm00001d003965_P001	Maize	mitochondrion	13.07	83.64
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	97.02	80.73
Os01t0139200-01	Rice	nucleus	74.57	78.24
EES00348	Sorghum	nucleus	72.02	76.47
Zm00001d039916_P010	Maize	nucleus	70.88	75.72
Zm00001d008591_P001	Maize	mitochondrion	71.02	75.19
GSMUA_AchrUn_...	Banana	nucleus	33.1	60.36
GSMUA_Achr10P...	Banana	nucleus	25.85	53.85
GSMUA_Achr8P18320_001	Banana	nucleus	37.64	51.16
GSMUA_Achr2P07240_001	Banana	nucleus	39.49	50.55
GSMUA_Achr1P21240_001	Banana	nucleus	41.34	48.5
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	45.6	45.86
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	43.61	43.67
VIT_01s0011g04140.t01	Wine grape	nucleus	35.94	36.3
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	13.07	35.38
CDY36115	Canola	cytosol, nucleus, vacuole	12.93	35.14
VIT_17s0000g03180.t01	Wine grape	nucleus	31.68	34.95
KRH35888	Soybean	nucleus	34.52	34.37
KRG90906	Soybean	nucleus, plastid	35.09	34.26
CDY24410	Canola	cytosol	12.5	34.11
Solyc05g008830.2.1	Tomato	nucleus	30.82	33.75
TraesCS2A01G207800.1	Wheat	plastid	17.76	33.69
PGSC0003DMT400015310	Potato	nucleus	31.11	33.23
CDY25942	Canola	nucleus, plastid	28.69	32.17
KRH39133	Soybean	cytosol	30.54	32.14
KRH48572	Soybean	cytosol	29.26	32.14
KRH38173	Soybean	nucleus	29.55	31.9
Bra017462.1-P	Field mustard	cytosol, plastid	28.98	31.78
CDY41073	Canola	nucleus, plastid	28.41	31.7
Solyc03g118870.2.1	Tomato	nucleus	28.55	31.55
Solyc04g007460.2.1	Tomato	plastid	30.54	31.52
AT2G01190.1	Thale cress	nucleus, plastid	32.1	31.39
PGSC0003DMT400014442	Potato	nucleus	30.54	31.39
Bra024899.1-P	Field mustard	nucleus, plastid	32.24	31.27
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	12.07	31.25
CDY68695	Canola	nucleus	24.29	31.09
CDY17690	Canola	nucleus, plastid	31.39	30.52
VIT_14s0006g02490.t01	Wine grape	nucleus	22.3	30.25
Bra006344.1-P	Field mustard	plastid	14.77	29.3
Solyc02g086360.2.1	Tomato	cytosol	23.01	29.08
PGSC0003DMT400067817	Potato	cytosol	23.01	29.08
AT3G18230.1	Thale cress	nucleus, plastid	27.27	28.83
Bra022297.1-P	Field mustard	nucleus	23.44	28.8
CDY40994	Canola	cytosol	23.3	28.77
CDY24442	Canola	cytosol	23.3	28.72
Bra037596.1-P	Field mustard	nucleus	26.14	28.62
CDY66514	Canola	nucleus	26.14	28.57
CDX92217	Canola	cytosol	23.58	28.33
Bra022296.1-P	Field mustard	cytosol	23.72	28.21
AT5G16220.1	Thale cress	plastid	18.04	26.68
CDX70680	Canola	plastid	17.05	26.03
CDX78676	Canola	plastid	16.48	25.84
TraesCS4A01G281600.1	Wheat	plastid	9.09	25.81
Bra008633.1-P	Field mustard	plastid	17.19	24.95
CDX69461	Canola	plastid	17.19	24.95
TraesCS6A01G217000.1	Wheat	plastid	6.96	24.38
TraesCS1A01G266900.1	Wheat	nucleus	10.23	19.73
TraesCS6A01G380500.1	Wheat	cytosol	13.92	18.42

Protein Annotations

EnsemblPlants:TraesCS3A01G051800.1	EnsemblPlantsGene:TraesCS3A01G051800	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:

Description

No Description!

Coordinates

chr3A:-:27589467..27591758

Molecular Weight (calculated)

75299.3 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.731

Length

704 amino acids

Sequence
(BLAST)

001: MDSAPPAAGA GYPESTDSSP RSRGGDSWDE PFPSSAAAAA AGGGGGRLRL MCSFGGRIVP RPTDKSLCYL GGETRIVAVD RNASLADVHG RLSRSLLAGQ
101: PFTLKYQLPN EDLDSLISVS TDEDLDNLVD EYDRVAATSS SGGASSRTSR IRLFLFPAKP ESSSSLGSLL DDSSKSENWF VDALNSAISG SFDGIPRGIS
201: TDSASVNCLL GLEDDNASQH SRSGVPNSGP AEDQRVNQQK LAAAAAAARH QHDVQSVPDS PMLDKNSSFG STSSAPSLSN LPPIRVRPED RQPVAPPVSV
301: EDHFAQMGIS EQQGLPPPVM GYMQPPPQVP IPAMAMQAAS SISPSEPPSR AFSDDDRSDH GGRMQQPPKQ EVPPTADPNN RAMFYNDMSP RNEMKRDMPV
401: GTDAASYRAP APAPDAAASA AAAQPPPGYV YAQMQPQQQL QQPPQQQLQQ QQQLQQQQQL QQQAQQQLPQ QIQQQPQQQL PPQLQQQAQQ QPPQPQQAHQ
501: PAPQQYVTAG NQHFIHNPAT GTFIPIQSYY QQTVPQQAPQ QQQSPAFDPN TGMYYIPMQR PNAPQQYTIP AGAVAPMAAP TLVDSVPKPT VPIPQQYMKP
601: ELQQPGMYRT AAPAAAAPGP NTTPNYAGMG YHHVMQSHHH PASQPPPTMA GNYGYPEYAA DPRAQVFYSQ AGAPPASLPP QYQQPMGAPD AGGQADMNQN
701: RGGS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.