Factsheet for GSMUA_AchrUn_randomP06840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P19900_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	25.91	69.93
Zm00001d003965_P001	Maize	mitochondrion	18.65	65.45
GSMUA_Achr10P...	Banana	nucleus	54.66	62.43
GSMUA_Achr8P18320_001	Banana	nucleus	63.73	47.49
GSMUA_Achr2P07240_001	Banana	nucleus	66.58	46.73
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	84.2	46.43
GSMUA_Achr1P21240_001	Banana	nucleus	67.62	43.5
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	67.88	37.27
EES00348	Sorghum	nucleus	62.44	36.35
Zm00001d039916_P010	Maize	nucleus	61.4	35.96
Os01t0139200-01	Rice	nucleus	61.66	35.47
Zm00001d008591_P001	Maize	mitochondrion	60.62	35.19
TraesCS3D01G050900.1	Wheat	nucleus	60.36	35.14
GSMUA_Achr3P19440_001	Banana	plastid	13.99	33.54
TraesCS3A01G051800.1	Wheat	nucleus	60.36	33.1
CDY36115	Canola	cytosol, nucleus, vacuole	21.5	32.05
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.5	31.92
CDY24410	Canola	cytosol	20.73	31.01
GSMUA_Achr4P33650_001	Banana	mitochondrion	24.61	30.65
TraesCS3B01G060500.1	Wheat	cytosol	52.07	30.36
VIT_17s0000g03180.t01	Wine grape	nucleus	47.67	28.84
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	20.21	28.68
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	60.88	27.78
KRH35888	Soybean	nucleus	49.22	26.87
CDY68695	Canola	nucleus	38.08	26.73
GSMUA_Achr10P...	Banana	cytosol	14.25	26.7
Solyc03g118870.2.1	Tomato	nucleus	44.04	26.69
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.03	26.61
GSMUA_Achr8P16400_001	Banana	plastid	13.73	26.24
KRG90906	Soybean	nucleus, plastid	48.96	26.21
VIT_01s0011g04140.t01	Wine grape	nucleus	47.15	26.11
CDY25942	Canola	nucleus, plastid	42.23	25.96
PGSC0003DMT400014442	Potato	nucleus	45.34	25.55
Bra017462.1-P	Field mustard	cytosol, plastid	42.49	25.55
Bra022297.1-P	Field mustard	nucleus	37.82	25.48
KRH39133	Soybean	cytosol	44.04	25.41
CDY41073	Canola	nucleus, plastid	41.45	25.36
KRH48572	Soybean	cytosol	41.97	25.27
CDX92217	Canola	cytosol	38.34	25.26
PGSC0003DMT400015310	Potato	nucleus	43.01	25.19
Bra022296.1-P	Field mustard	cytosol	38.6	25.17
CDY40994	Canola	cytosol	37.05	25.09
CDY24442	Canola	cytosol	37.05	25.04
AT2G01190.1	Thale cress	nucleus, plastid	46.37	24.86
Bra006344.1-P	Field mustard	plastid	22.8	24.79
Solyc05g008830.2.1	Tomato	nucleus	41.19	24.73
Solyc04g007460.2.1	Tomato	plastid	43.52	24.63
CDY17690	Canola	nucleus, plastid	46.11	24.59
Bra024899.1-P	Field mustard	nucleus, plastid	46.11	24.52
AT3G18230.1	Thale cress	nucleus, plastid	40.16	23.27
PGSC0003DMT400067817	Potato	cytosol	33.42	23.16
Solyc02g086360.2.1	Tomato	cytosol	33.42	23.16
KRH38173	Soybean	nucleus	39.12	23.16
Bra037596.1-P	Field mustard	nucleus	37.82	22.71
CDY66514	Canola	nucleus	37.82	22.67
VIT_14s0006g02490.t01	Wine grape	nucleus	30.05	22.35
GSMUA_Achr6P06660_001	Banana	plastid	13.99	22.31
AT5G16220.1	Thale cress	plastid	24.61	19.96
CDX78676	Canola	plastid	22.28	19.15
CDX70680	Canola	plastid	22.8	19.09
Bra008633.1-P	Field mustard	plastid	23.58	18.76
CDX69461	Canola	plastid	23.58	18.76
GSMUA_Achr11P...	Banana	plastid	14.77	18.57
GSMUA_Achr3P21900_001	Banana	nucleus	17.36	18.21
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	17.88	16.67
GSMUA_Achr1P05710_001	Banana	cytosol	19.43	15.4

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP06840_001	EnsemblPlants:GSMUA_AchrUn_randomT06840_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG06840_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
PFscan:PS51745	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000294F92B	UniProt:M0U6Z5
MapMan:35.2	:	:	:	:	:

Description

PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06840_001]

Coordinates

chrchrUn_random:+:30005573..30007941

Molecular Weight (calculated)

41124.7 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.483

Length

386 amino acids

Sequence
(BLAST)

001: METAVAAAVS GGGLGYADSV DSSPRSRGGD SWDEPPFPSA AAGRLRLMCS YGGRIVPRPT DKTLCYLGGE TRIVVVDRHS SLSDLSAKLS RTHLRGRPFS
101: LKYQLPNEDL DSLISVATDE DLENMIDEYD RILTAASTGT SGGSNRSSRL RLFLFPSKPE SSPTSSIGSL LDDSKSETWF VDALNSTMGG MGIDDLPRGL
201: SSDSTSVNCL LGLEDDSSIH SRGLVLPRPD SSGKLARHVQ DVHSVPDSPM LDTTSSFGSA SSVPSLSNLP PIRVRPDDRP SDPRIAGLDD HFAHMNLSSG
301: GGQRLGDDFK EPSYAPQLQP PPPIPFSASS ASNLTISPTE NPSRAFSSDD DKSDQGGIRK PQQPPKPTGI EAPNSDLGSR CYFLFV

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.