CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRH03222
KRH09878
KRH23441
KRH36141
KRH54323
KRH63619

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	KRH09878	AT3G16120.1	21798944
AT2G01190.1	KRH23441	AT3G16120.1	21798944
AT2G01190.1	KRH03222	AT3G48240.1	21798944
AT2G01190.1	KRH54323	AT3G48240.1	21798944
AT2G01190.1	KRH63619	AT3G48240.1	21798944
AT2G01190.1	KRG90619	AT5G08330.1	21798944
AT2G01190.1	KRH36141	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35888	Soybean	nucleus	93.34	95.19
VIT_01s0011g04140.t01	Wine grape	nucleus	61.44	63.56
Zm00001d003965_P001	Maize	mitochondrion	9.02	59.09
KRH38173	Soybean	nucleus	49.93	55.21
HORVU3Hr1G008310.1	Barley	cytosol	10.4	52.45
Solyc05g008830.2.1	Tomato	nucleus	46.6	52.26
CDY41073	Canola	nucleus, plastid	43.41	49.6
Bra017462.1-P	Field mustard	cytosol, plastid	43.97	49.38
GSMUA_AchrUn_...	Banana	nucleus	26.21	48.96
CDY25942	Canola	nucleus, plastid	42.44	48.73
Bra024899.1-P	Field mustard	nucleus, plastid	48.82	48.48
AT2G01190.1	Thale cress	nucleus, plastid	48.27	48.33
CDY17690	Canola	nucleus, plastid	48.27	48.07
KRH57272	Soybean	cytosol	5.83	45.65
KRH39133	Soybean	cytosol	41.61	44.84
GSMUA_Achr10P...	Banana	nucleus	20.25	43.2
KRH48572	Soybean	cytosol	38.14	42.9
GSMUA_Achr8P18320_001	Banana	nucleus	29.4	40.93
GSMUA_Achr2P07240_001	Banana	nucleus	29.82	39.09
Zm00001d039916_P010	Maize	nucleus	33.43	36.57
EES00348	Sorghum	nucleus	33.56	36.5
Zm00001d008591_P001	Maize	mitochondrion	33.01	35.79
Os01t0139200-01	Rice	nucleus	33.29	35.77
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	34.67	35.71
TraesCS3D01G050900.1	Wheat	nucleus	32.45	35.29
TraesCS3A01G051800.1	Wheat	nucleus	34.26	35.09
TraesCS3B01G060500.1	Wheat	cytosol	31.62	34.44
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	33.56	34.42
GSMUA_Achr1P21240_001	Banana	nucleus	28.29	34.0
KRH03222	Soybean	cytosol	9.02	32.83
KRH41951	Soybean	nucleus	19.0	32.54
KRH54323	Soybean	cytosol, nucleus, plastid	8.32	32.26
KRH63619	Soybean	plastid	8.6	31.96
KRH49930	Soybean	nucleus	18.17	30.9
KRH29762	Soybean	plastid	4.85	29.41
KRH45586	Soybean	plastid	7.35	29.12
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	33.98	28.96
KRH69636	Soybean	plastid	8.46	28.77
KRH10652	Soybean	cytosol	17.61	28.48
KRH21700	Soybean	nucleus	17.34	28.41
KRH26304	Soybean	nucleus	10.12	27.97
KRH06059	Soybean	nucleus	10.26	27.61
KRH74522	Soybean	nucleus	8.74	27.27
KRH42038	Soybean	cytosol	17.75	26.89
KRH49860	Soybean	nucleus	17.61	26.85
KRH72507	Soybean	cytosol, nucleus, peroxisome	13.04	26.18
KRH16903	Soybean	nucleus	12.76	25.99

Protein Annotations

EntrezGene:100784396	Gene3D:3.10.20.90	MapMan:35.2	EMBL:ACUP02012652	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G121100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NFP9	InterPro:IPR000270	EnsemblPlants:KRG90906
ProteinID:KRG90906	ProteinID:KRG90906.1	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS51745	PANTHER:PTHR31066
PANTHER:PTHR31066:SF3	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000233DC32	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:36364859..36367873

Molecular Weight (calculated)

78255.8 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.661

Length

721 amino acids

Sequence
(BLAST)

001: MEAQPPTPST APPPPPQHLS YPDSVESSPR SRNTDSWDEP FAPASTKLRL MCSYGGHIVP RPHDKSLCYV GGDTRIIVSE RATSLADLST RLSKTFLNGR
101: PFTLKYQLPN EDLDSLISVT TDEDLENMID EYDRTAAAAT SAVKPSRIRL FLFPTKPEST HSIPAQILDT SAKSDDWFLN ALNGAGLLNR GFSDSASVNC
201: LLGLDDEVAG NNLEPGSKDG VDGGVGGGGA SQGGSFGNGK NLKQDVHSVP DSPMLETTSS FGSTSSSPSL ANLPPIRVHV VEDQRVLGIE DQFAQIGVGV
301: GPKQQPDEGF VLLSSPPPPP VPATLAAVGV PIGPATVVAG EHHNRVVSDD ERSDHGVPVG YRKPPTPQPQ VQSQTQAQSQ AQTQTLAPQF HQKSTAGGAV
401: VDLPSPDSVS SDSSLANAIS RSKAAVYQEQ AQIQPGTTRV PSNPVDPKLN VSDLHGRIQM QQHVHDPGYL LQQQFEQHQQ LQSQQQQQFE QHQQLQSQPQ
501: HQFEQHQHQH QQTLPQQQQQ FIHGAHFIHH NPAIPAYYPV YPSQQHPQHP QVYYVTARQA QAYNLPLQQA NMGESAGNIA SSRPQTPPNP STLVQQPATY
601: NPIRNAPMPK TEMNAYRAAT AGNPQLVQVP TSQHQQQYVT YSQIHHPSQS MAPNSAAPAN YAFDYADPAH AQIYYSQPMA PTIPSQYQTM TAAAVMMQEG
701: SAQHPSDSVK QQQQIRTSQP L

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.