CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH10652
KRH21700
KRH42038
KRH49860
KRH52586
KRH57272
KRH61926
KRH67075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	KRH52586	AT1G22920.1	21798944
AT3G48240.1	KRH61926	AT1G22920.1	21798944
AT3G48240.1	KRG95394	AT5G22355.1	21798944
AT3G48240.1	KRH67075	AT5G22355.1	21798944
AT3G48240.1	KRH10652	AT5G64430.1	21798944
AT3G48240.1	KRH21700	AT5G64430.1	21798944
AT3G48240.1	KRH42038	AT5G64430.1	21798944
AT3G48240.1	KRH49860	AT5G64430.1	21798944
AT3G48240.1	KRH57272	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54323	Soybean	cytosol, nucleus, plastid	86.6	90.32
KRH03222	Soybean	cytosol	63.92	62.63
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	43.3	52.83
CDY41501	Canola	cytosol	47.94	49.21
Bra038608.1-P	Field mustard	nucleus	47.42	47.42
CDY48129	Canola	cytosol, nucleus, plastid	46.39	47.12
CDY72321	Canola	plastid	43.3	46.93
CDX84387	Canola	nucleus	46.91	46.43
AT5G63130.2	Thale cress	nucleus	45.88	46.35
CDY39571	Canola	plastid	42.27	44.81
CDY48161	Canola	plastid	42.27	44.81
Bra018071.1-P	Field mustard	plastid	42.27	44.81
KRH29762	Soybean	plastid	27.32	44.54
PGSC0003DMT400069641	Potato	mitochondrion	39.69	44.51
Bra035855.1-P	Field mustard	cytosol	43.3	43.98
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	40.72	43.89
PGSC0003DMT400046652	Potato	plastid	43.81	42.93
KRH45586	Soybean	plastid	37.11	39.56
Solyc06g071750.2.1	Tomato	plastid	39.18	39.38
KRH57272	Soybean	cytosol	18.56	39.13
KRH69636	Soybean	plastid	41.24	37.74
KRH74522	Soybean	nucleus	41.24	34.63
KRH26304	Soybean	nucleus	30.41	22.61
KRH06059	Soybean	nucleus	30.93	22.39
KRH16903	Soybean	nucleus	26.8	14.69
KRH72507	Soybean	cytosol, nucleus, peroxisome	26.29	14.21
KRH10652	Soybean	cytosol	32.47	14.13
KRH21700	Soybean	nucleus	31.96	14.09
KRH41951	Soybean	nucleus	27.32	12.59
KRH42038	Soybean	cytosol	29.9	12.18
KRH49860	Soybean	nucleus	29.38	12.05
KRH49930	Soybean	nucleus	25.77	11.79
KRH48572	Soybean	cytosol	29.9	9.05
KRH35888	Soybean	nucleus	32.47	8.91
KRH38173	Soybean	nucleus	29.38	8.74
KRG90906	Soybean	nucleus, plastid	31.96	8.6
KRH39133	Soybean	cytosol	29.38	8.52

Protein Annotations

EMBL:ACUP02002704	EnsemblPlants:KRH63619	EnsemblPlantsGene:GLYMA_04G187700	EntrezGene:100810563	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF10
PFAM:PF00564	ProteinID:KRH63619	ProteinID:KRH63619.1	ProteinID:KRH63620.1	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0002339948	UniProt:I1JXB3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr4:+:45854183..45856875

Molecular Weight (calculated)

21179.5 Da

IEP (calculated)

9.394

GRAVY (calculated)

-0.231

Length

194 amino acids

Sequence
(BLAST)

001: MESKPAQTIK LLCSYGGKIL PRATDGELRY VGGHTRVLTV DRSISFPELM VKLRVFCGSS VILRCQLPKG DLETLISITN DEDLASIIEE YDRSSLKLAH
101: PLKIKAVLSP PKSMKKASPV PSSASASSSA THSPSGSPHT STESLPYAAF HRIGRHNRPP VVYAIGAAKA CCYTQFDGSP RFLYRGPHCN YYCH

Best Arabidopsis Sequence Match ( AT3G48240.1 )
(BLAST)

001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ

Arabidopsis Description

At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.