Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48161 | Canola | plastid | 97.27 | 97.27 |
| Bra018071.1-P | Field mustard | plastid | 96.17 | 96.17 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 74.32 | 75.56 |
| CDY72321 | Canola | plastid | 62.3 | 63.69 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 65.57 | 62.83 |
| CDY41501 | Canola | cytosol | 63.39 | 61.38 |
| CDX84387 | Canola | nucleus | 65.03 | 60.71 |
| PGSC0003DMT400069641 | Potato | mitochondrion | 42.62 | 45.09 |
| VIT_17s0000g09190.t01 | Wine grape | cytosol, nucleus, plastid | 38.8 | 44.65 |
| KRH54323 | Soybean | cytosol, nucleus, plastid | 43.72 | 43.01 |
| CDY66304 | Canola | cytosol | 38.8 | 42.77 |
| CDY61217 | Canola | cytosol, mitochondrion | 38.8 | 42.77 |
| KRH63619 | Soybean | plastid | 44.81 | 42.27 |
| Solyc06g071750.2.1 | Tomato | plastid | 43.72 | 41.45 |
| CDX83621 | Canola | mitochondrion | 40.98 | 41.44 |
| CDY28543 | Canola | plastid | 39.34 | 40.91 |
| CDY48987 | Canola | plastid | 39.89 | 40.78 |
| PGSC0003DMT400046652 | Potato | plastid | 43.72 | 40.4 |
| CDY13638 | Canola | mitochondrion | 39.34 | 39.78 |
| KRH03222 | Soybean | cytosol | 42.62 | 39.39 |
| CDY20093 | Canola | extracellular, plasma membrane | 38.8 | 36.6 |
| CDX91540 | Canola | nucleus | 32.79 | 21.28 |
| CDY16375 | Canola | nucleus | 32.79 | 21.28 |
| CDY21444 | Canola | mitochondrion | 30.6 | 21.21 |
| CDX83177 | Canola | mitochondrion | 30.6 | 21.05 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 25.68 | 18.15 |
| CDY24410 | Canola | cytosol | 24.04 | 17.05 |
| CDY31319 | Canola | nucleus | 24.59 | 16.13 |
| CDY62874 | Canola | nucleus | 26.23 | 12.09 |
| CDY46377 | Canola | nucleus | 25.68 | 11.87 |
| CDX91230 | Canola | nucleus | 26.78 | 11.09 |
| CDX97304 | Canola | nucleus | 26.78 | 11.04 |
| CDX84525 | Canola | nucleus | 28.42 | 10.72 |
| CDY58263 | Canola | nucleus | 27.87 | 10.65 |
| CDX69896 | Canola | nucleus | 27.32 | 10.64 |
| CDY21590 | Canola | nucleus | 27.32 | 10.53 |
| CDX78676 | Canola | plastid | 25.68 | 10.47 |
| CDY46804 | Canola | nucleus | 26.78 | 10.29 |
| CDX70680 | Canola | plastid | 25.68 | 10.2 |
| CDX69461 | Canola | plastid | 25.14 | 9.48 |
| CDY25942 | Canola | nucleus, plastid | 31.69 | 9.24 |
| CDY68695 | Canola | nucleus | 26.78 | 8.91 |
| CDY40994 | Canola | cytosol | 27.32 | 8.77 |
| CDY24442 | Canola | cytosol | 27.32 | 8.76 |
| CDY41073 | Canola | nucleus, plastid | 30.05 | 8.72 |
| CDX92217 | Canola | cytosol | 27.32 | 8.53 |
| CDY17690 | Canola | nucleus, plastid | 31.69 | 8.01 |
| CDY66514 | Canola | nucleus | 26.78 | 7.61 |
Protein Annotations
| EnsemblPlants:CDY39571 | EnsemblPlantsGene:GSBRNA2T00068121001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF10 | PFAM:PF00564 | ProteinID:CDY39571 |
| ProteinID:CDY39571.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EE4814 | UniProt:A0A078HPR6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng09400DBnaCnng09400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPR6]
Coordinates
chrLK032452:+:117180..118187
Molecular Weight (calculated)
20351.4 Da
IEP (calculated)
8.570
GRAVY (calculated)
-0.254
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTKKSESS LKFLCSYGGR ILPRSIDGKL RYVGGFTRVL SVVDSISFSE LMVKLEEFCG YAVDLKCQLP DGDLETLISV KSDEDLTNIV EEYNRVYGGK
101: IRAVLSTPKH VSPPSSGGGG DVSPISPFSV VASPSPPPAY RRFPLSRYQM ENLQSGIFRK RAEEYSRCCK CRVQNIDSNL IWH
101: IRAVLSTPKH VSPPSSGGGG DVSPISPFSV VASPSPPPAY RRFPLSRYQM ENLQSGIFRK RAEEYSRCCK CRVQNIDSNL IWH
001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ
Arabidopsis Description
At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.