Factsheet for PGSC0003DMT400046652

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 1
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008036
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G48240.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT3G48240.1	PGSC0003DMT400008036	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069641	Potato	mitochondrion	64.65	73.99
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	42.42	52.83
KRH54323	Soybean	cytosol, nucleus, plastid	41.92	44.62
KRH63619	Soybean	plastid	42.93	43.81
CDY39571	Canola	plastid	40.4	43.72
Bra018071.1-P	Field mustard	plastid	40.4	43.72
CDY48161	Canola	plastid	39.9	43.17
CDY41501	Canola	cytosol	40.4	42.33
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	37.88	41.67
KRH03222	Soybean	cytosol	41.41	41.41
Bra038608.1-P	Field mustard	nucleus	39.9	40.72
CDX84387	Canola	nucleus	39.39	39.8
AT5G63130.2	Thale cress	nucleus	38.38	39.58
CDY48129	Canola	cytosol, nucleus, plastid	37.88	39.27
Bra035855.1-P	Field mustard	cytosol	37.88	39.27
CDY72321	Canola	plastid	35.35	39.11
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	41.92	35.32
PGSC0003DMT400078796	Potato	cytosol	24.75	18.15
PGSC0003DMT400097584	Potato	nucleus	29.29	15.76
PGSC0003DMT400008036	Potato	nucleus	29.8	12.02
PGSC0003DMT400016330	Potato	nucleus	27.78	11.98
PGSC0003DMT400057688	Potato	nucleus	24.75	11.78
PGSC0003DMT400015310	Potato	nucleus	29.29	8.8
PGSC0003DMT400067817	Potato	cytosol	24.75	8.8
PGSC0003DMT400014442	Potato	nucleus	26.26	7.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400046652	EnsemblPlantsGene:PGSC0003DMG400018115	EntrezGene:102580365	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
PGSC:PGSC0003DMG400018115	RefSeq:XP_006344465.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000294F1A9
UniProt:M1BJE8	MapMan:35.2	:	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018115]

Coordinates

chr3:-:52102443..52104300

Molecular Weight (calculated)

21943.5 Da

IEP (calculated)

8.954

GRAVY (calculated)

-0.251

Length

198 amino acids

Sequence
(BLAST)

001: MNSMNGSQVI KFLYSYGGRI VPRRSDGKLR YIGGFTRVLS VDKSISFAEL MVKFGESCGS SMSLKCKLPT EDLDVLVSIT CDEDLMNVIQ EYDRVSALTN
101: QEMKIRAVLC PLNSVKKVSP PSSPMSCFDF PASRMKPEKL RCFYSPPSYA AAAAARCCSP ALGYPVGGRK DGGKFYYPCC DHGSPRHLYY VAQRNHSQ

Best Arabidopsis Sequence Match ( AT3G48240.1 )
(BLAST)

001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ

Arabidopsis Description

At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.