Factsheet for PGSC0003DMT400015310

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007460.2.1	Tomato	plastid	95.3	92.08
Zm00001d003965_P001	Maize	mitochondrion	9.56	57.27
HORVU3Hr1G008310.1	Barley	cytosol	10.77	49.65
GSMUA_AchrUn_...	Banana	nucleus	25.19	43.01
PGSC0003DMT400014442	Potato	nucleus	41.43	39.85
GSMUA_Achr10P...	Banana	nucleus	20.03	39.05
GSMUA_Achr8P18320_001	Banana	nucleus	28.98	36.87
PGSC0003DMT400067817	Potato	cytosol	31.11	36.8
GSMUA_Achr2P07240_001	Banana	nucleus	28.83	34.55
PGSC0003DMT400069641	Potato	mitochondrion	8.95	34.1
Os01t0139200-01	Rice	nucleus	33.54	32.94
Zm00001d039916_P010	Maize	nucleus	32.93	32.93
EES00348	Sorghum	nucleus	32.63	32.43
Zm00001d008591_P001	Maize	mitochondrion	32.63	32.33
PGSC0003DMT400057688	Potato	nucleus	20.33	32.21
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	33.99	31.86
GSMUA_Achr1P21240_001	Banana	nucleus	28.83	31.67
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	33.54	31.57
TraesCS3D01G050900.1	Wheat	nucleus	31.56	31.37
TraesCS3A01G051800.1	Wheat	nucleus	33.23	31.11
TraesCS3B01G060500.1	Wheat	cytosol	30.5	30.36
PGSC0003DMT400046652	Potato	plastid	8.8	29.29
PGSC0003DMT400016330	Potato	nucleus	19.58	28.1
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	9.56	26.81
PGSC0003DMT400078796	Potato	cytosol	10.93	26.67
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	33.38	26.0
PGSC0003DMT400008036	Potato	nucleus	18.66	25.05
PGSC0003DMT400097584	Potato	nucleus	11.08	19.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400015310	EnsemblPlantsGene:PGSC0003DMG400005971	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	PFAM:PF00564	PFscan:PS51745
PGSC:PGSC0003DMG400005971	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000294B51E	UniProt:M1A5T8
MapMan:35.2	:	:	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005971]

Coordinates

chr4:-:1820598..1822966

Molecular Weight (calculated)

71573.5 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.681

Length

659 amino acids

Sequence
(BLAST)

001: MSQPPPPTAS HINYANSVDS SPKSRKTNSW DDQQQQPPHA GGGGGSNGKI RLMCSYGGHI IPRPHDKSLC YIGGDTRIFV TDRNTSLSDL SSRLSKTLLA
101: GGPFWLKYQL PNEDLDSLIS VTTDEDLENM IEEYDRVTKT SRIRVFLFTS EFDSVSSIGS ILQSSTKSED WFVHALNGAT STSTTKVFSE SSSVNCLLGL
201: DDDVGNCNVK SVDGQLEGSF GAKNVKISAH DVQSVPDSPM VETTSSFGST SSTPSLTSLP PIKVNVEENQ RIGIEEQFSQ LGVGGKVEQK QEEGGFMGLT
301: SPPAPAAPVV GTVFSGVPVA VGGDYGNRIF SDDERSEQGV TVGYRNPVQT QPQQQQPPQL QPKLVLPSDL PSPNSVSSES SVMSGQRHFF YQEPAGQIHS
401: GNNRVSANSV DMKQSDPNNR AQVQQQQVQD AGYAMPVQYD QHQQMYQPQQ YVHASQYIHH TPSGPVPMTS YYPIYPPQQQ THPPHPALEH QYPVYLVHSR
501: QPSQAYNLPV QQANYSESAQ TNVPSNQPQT PPAPSMAAPA AAYNHPGNPP ASKPEMTAGA YRTAAAGTPQ LVQITSGQHQ QQYVGYSQIH HPSQPIAPTS
601: RANTNYAYEF SDPTHAQIYY SQAHAPQFAT QYQTMTSSPA VGLHSTSSQL PTEKNQPTN

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.