Factsheet for GSMUA_Achr10P19740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P19900_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	27.81	65.73
Zm00001d003965_P001	Maize	mitochondrion	21.01	64.55
GSMUA_AchrUn_...	Banana	nucleus	62.43	54.66
GSMUA_Achr8P18320_001	Banana	nucleus	69.53	45.37
GSMUA_Achr2P07240_001	Banana	nucleus	59.76	36.73
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	73.37	35.28
GSMUA_Achr3P19440_001	Banana	plastid	15.98	33.54
GSMUA_Achr1P21240_001	Banana	nucleus	59.47	33.5
GSMUA_Achr4P33650_001	Banana	mitochondrion	28.11	30.65
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	61.54	29.71
EES00348	Sorghum	nucleus	57.1	29.11
Zm00001d039916_P010	Maize	nucleus	55.92	28.68
Os01t0139200-01	Rice	nucleus	56.8	28.61
Zm00001d008591_P001	Maize	mitochondrion	56.21	28.57
CDY36115	Canola	cytosol, nucleus, vacuole	21.89	28.57
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.89	28.46
CDY24410	Canola	cytosol	21.6	28.29
TraesCS3D01G050900.1	Wheat	nucleus	53.85	27.45
TraesCS3B01G060500.1	Wheat	cytosol	53.55	27.34
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	17.16	26.61
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	21.01	26.1
TraesCS3A01G051800.1	Wheat	nucleus	53.85	25.85
GSMUA_Achr8P16400_001	Banana	plastid	15.38	25.74
GSMUA_Achr10P...	Banana	cytosol	15.68	25.73
VIT_17s0000g03180.t01	Wine grape	nucleus	42.6	22.57
GSMUA_Achr6P06660_001	Banana	plastid	15.68	21.9
CDY68695	Canola	nucleus	35.5	21.82
Bra022297.1-P	Field mustard	nucleus	36.39	21.47
Solyc03g118870.2.1	Tomato	nucleus	39.94	21.19
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	52.96	21.16
CDY40994	Canola	cytosol	35.5	21.05
CDY24442	Canola	cytosol	35.5	21.02
CDX92217	Canola	cytosol	36.39	20.99
Bra022296.1-P	Field mustard	cytosol	36.39	20.78
CDY25942	Canola	nucleus, plastid	38.46	20.7
KRH35888	Soybean	nucleus	43.2	20.65
Bra006344.1-P	Field mustard	plastid	21.6	20.56
KRG90906	Soybean	nucleus, plastid	43.2	20.25
VIT_01s0011g04140.t01	Wine grape	nucleus	41.42	20.09
PGSC0003DMT400015310	Potato	nucleus	39.05	20.03
PGSC0003DMT400014442	Potato	nucleus	40.53	20.0
Solyc02g086360.2.1	Tomato	cytosol	32.84	19.93
PGSC0003DMT400067817	Potato	cytosol	32.84	19.93
Bra024899.1-P	Field mustard	nucleus, plastid	42.6	19.83
KRH48572	Soybean	cytosol	37.57	19.81
Bra017462.1-P	Field mustard	cytosol, plastid	37.57	19.78
CDY17690	Canola	nucleus, plastid	42.31	19.75
KRH39133	Soybean	cytosol	39.05	19.73
CDY41073	Canola	nucleus, plastid	36.69	19.65
Solyc04g007460.2.1	Tomato	plastid	39.65	19.65
AT2G01190.1	Thale cress	nucleus, plastid	41.42	19.44
Solyc05g008830.2.1	Tomato	nucleus	36.39	19.13
AT3G18230.1	Thale cress	nucleus, plastid	37.28	18.92
Bra037596.1-P	Field mustard	nucleus	35.21	18.51
VIT_14s0006g02490.t01	Wine grape	nucleus	28.4	18.5
CDY66514	Canola	nucleus	35.21	18.48
KRH38173	Soybean	nucleus	34.32	17.79
GSMUA_Achr3P21900_001	Banana	nucleus	19.23	17.66
GSMUA_Achr11P...	Banana	plastid	15.38	16.94
AT5G16220.1	Thale cress	plastid	22.78	16.18
CDX70680	Canola	plastid	21.89	16.05
CDX78676	Canola	plastid	21.3	16.04
CDX69461	Canola	plastid	22.78	15.88
Bra008633.1-P	Field mustard	plastid	22.78	15.88
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	18.34	14.98
GSMUA_Achr1P05710_001	Banana	cytosol	18.05	12.53

Protein Annotations

EnsemblPlants:GSMUA_Achr10P19740_001	EnsemblPlants:GSMUA_Achr10T19740_001	EnsemblPlantsGene:GSMUA_Achr10G19740_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000296C1DA	UniProt:M0RJP9	MapMan:35.2

Description

PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G19740_001]

Coordinates

chr10:-:25999322..26000338

Molecular Weight (calculated)

36001.0 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.449

Length

338 amino acids

Sequence
(BLAST)

001: MCSYGGRIVP RPADKSLCYL GGETRMVTVD RGSSFADLSA KLSRDLLGGR PFSLKYQLPN EDLDALISVT TDEDLENMIE ELDRISAATA APTSPGGGGS
101: RRSRRPRLFL FPSNPESAPS SFMGSLLDES KSETWFVDAL NTAIGGMGID GLPCGRSTDS ASVVCLLGLE DDSSVHNRSG GGQQPESVQV VLPHRDSSGT
201: LVRHGQNLNS VPGSPMLDKS PSLGSNSSTP SLSNLPSILV TTADLHADRH INGVDDHFAH MNPSTDKEPL HAVRHQPPPP LPLPIASVPT PTIYPTSRDF
301: DDDDDRSNHG GSVLEPPQPT KPGDPVSRYR LSCSLTSL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.