Factsheet for GSMUA_Achr3P21900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	46.47	55.7
KRH26304	Soybean	nucleus	27.99	39.46
KRH06059	Soybean	nucleus	27.17	37.31
GSMUA_Achr3P19440_001	Banana	plastid	15.22	34.78
CDY21444	Canola	mitochondrion	24.73	34.47
Bra000599.1-P	Field mustard	mitochondrion	24.73	34.34
CDX83177	Canola	mitochondrion	24.73	34.21
Bra022508.1-P	Field mustard	nucleus	26.09	34.04
CDY16375	Canola	nucleus	26.09	34.04
CDX91540	Canola	nucleus	25.82	33.69
AT5G49920.1	Thale cress	nucleus	25.54	32.64
GSMUA_Achr8P16400_001	Banana	plastid	16.58	30.2
GSMUA_Achr10P...	Banana	cytosol	16.85	30.1
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	17.66	29.82
PGSC0003DMT400097584	Potato	nucleus	29.62	29.62
Os05t0427100-01	Rice	cytosol	29.35	29.51
TraesCS1A01G266900.1	Wheat	nucleus	29.08	29.32
TraesCS1D01G267100.1	Wheat	nucleus	29.08	29.23
OQU78054	Sorghum	cytosol	28.53	28.69
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	29.89	28.42
Zm00001d010214_P003	Maize	cytosol	29.35	27.55
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	29.08	26.35
GSMUA_Achr6P06660_001	Banana	plastid	17.12	26.03
HORVU1Hr1G065470.6	Barley	mitochondrion	29.08	24.65
GSMUA_Achr4P33650_001	Banana	mitochondrion	17.39	20.65
GSMUA_Achr10P...	Banana	nucleus	17.66	19.23
GSMUA_AchrUn_...	Banana	nucleus	18.21	17.36
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	16.58	14.73
GSMUA_Achr1P05710_001	Banana	cytosol	16.03	12.12
GSMUA_Achr8P18320_001	Banana	nucleus	16.85	11.97
GSMUA_Achr2P07240_001	Banana	nucleus	17.39	11.64
GSMUA_Achr1P21240_001	Banana	nucleus	18.75	11.5
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	20.38	10.67
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	19.57	10.29

Protein Annotations

EnsemblPlants:GSMUA_Achr3P21900_001	EnsemblPlants:GSMUA_Achr3T21900_001	EnsemblPlantsGene:GSMUA_Achr3G21900_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	InterPro:RNA3'_term_phos_cycl-like_CS	PANTHER:PTHR31066	PFAM:PF00564
ScanProsite:PS01287	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000295FA82	UniProt:M0SGQ6
MapMan:35.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G21900_001]

Coordinates

chr3:-:22854135..22858565

Molecular Weight (calculated)

39648.7 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.419

Length

368 amino acids

Sequence
(BLAST)

001: MPSLSSNLTT IKDYKLDHVK TMFIYMPNNS VIYAAAAGDD DDSSSPSSMS PRNRLKFLCS YGGKILPRPY DGLLKYVGGD TRVLGVPRSI SFSELKERIQ
101: GMFRRCELIK YQLVSEDLDT LVTVTCDQEL VHMLEEYDRL DALHPCSPSF ASSPRFRLFL FASPSATSAS GCHRPAATLD QRYVDAINTA APTSPRRPMF
201: TVSSASSAFT SPTSTIDGPA ALLALRPNAP LGGSMQRVQS TPNLSGGGMH RVSSTPNLGQ NSGTGPQHHH NHHHHHPHHL HRQYTSAAAA YGAQAAGMGG
301: VWRNSGARRH EAGGFGSISW VPPAAPRGGV PYGGGSVCFG HADEAPSGRQ SRSGSPFRAP PREPIIWE

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.