Factsheet for PGSC0003DMT400097584

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26304	Soybean	nucleus	33.97	47.89
CDY21444	Canola	mitochondrion	33.42	46.59
KRH06059	Soybean	nucleus	33.7	46.27
CDX83177	Canola	mitochondrion	33.15	45.86
AT5G49920.1	Thale cress	nucleus	35.87	45.83
Bra000599.1-P	Field mustard	mitochondrion	32.88	45.66
CDY16375	Canola	nucleus	34.78	45.39
CDX91540	Canola	nucleus	34.78	45.39
Bra022508.1-P	Field mustard	nucleus	34.78	45.39
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	41.3	39.28
PGSC0003DMT400069641	Potato	mitochondrion	15.22	32.37
GSMUA_Achr11P...	Banana	plastid	25.82	30.94
GSMUA_Achr3P21900_001	Banana	nucleus	29.62	29.62
PGSC0003DMT400046652	Potato	plastid	15.76	29.29
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	17.93	28.09
Os05t0427100-01	Rice	cytosol	26.9	27.05
OQU78054	Sorghum	cytosol	26.36	26.5
TraesCS1D01G267100.1	Wheat	nucleus	25.82	25.96
TraesCS1A01G266900.1	Wheat	nucleus	25.54	25.75
Zm00001d010214_P003	Maize	cytosol	27.17	25.51
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	25.54	23.15
PGSC0003DMT400078796	Potato	cytosol	16.03	21.85
HORVU1Hr1G065470.6	Barley	mitochondrion	25.54	21.66
PGSC0003DMT400016330	Potato	nucleus	20.92	16.78
PGSC0003DMT400057688	Potato	nucleus	18.75	16.59
PGSC0003DMT400008036	Potato	nucleus	21.47	16.09
PGSC0003DMT400067817	Potato	cytosol	19.84	13.11
PGSC0003DMT400015310	Potato	nucleus	19.84	11.08
PGSC0003DMT400014442	Potato	nucleus	20.38	10.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400097584	EnsemblPlantsGene:PGSC0003DMG400047155	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF13	PFAM:PF00564	PGSC:PGSC0003DMG400047155
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000295B45C	UniProt:M1E0Y4	MapMan:35.2

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400047155]

Coordinates

chr1:-:80163191..80164378

Molecular Weight (calculated)

41121.6 Da

IEP (calculated)

8.058

GRAVY (calculated)

-0.655

Length

368 amino acids

Sequence
(BLAST)

001: MPIEGVSMVE EPVLCGSPLG SSPTSPKSRI KFLCSQGGKI LPQPTDGHLK YVGGETRVIS VPRDIKLSEL MKKLTPQIEG DMVLKYQLVH EELDALISVK
101: TDEDLRHMLD EYDRSESAGI PRLRAFLFPA KPVVVDHHTT PPEPLEQRYI DAINGIIRAR EAGIRIQQPI SISQASFGFS SACSSPRSPD SCTTDGVIHE
201: SLLQSIFQNR SQLHKVQSSP SFYNVSNQQQ HGLHHQQHHH YYNHRQQYYN GYQLNKPPHG PGDPVKGPDR LFSVRSVGRT EGLRYQMDHN QHYYQSPSRH
301: SRGGGCCIKC MHFDDYERRN GSISPSSYSM EIGNGCASPG GYSVERRTSS LSPSPIPLSP RFSNMADT

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.