Factsheet for PGSC0003DMT400047888

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013530.2.1	Tomato	plastid	84.26	90.41
VIT_00s0291g00050.t01	Wine grape	plastid	49.79	60.0
CDY28543	Canola	plastid	42.13	56.25
Bra032936.1-P	Field mustard	plastid	42.55	55.87
CDY48987	Canola	plastid	42.13	55.31
CDX83621	Canola	mitochondrion	42.55	55.25
Bra025209.1-P	Field mustard	mitochondrion	41.7	54.14
CDY13638	Canola	mitochondrion	41.7	54.14
KRH29762	Soybean	plastid	26.38	52.1
KRH69636	Soybean	plastid	45.96	50.94
AT1G70640.1	Thale cress	cytosol	35.32	47.7
KRH74522	Soybean	nucleus	46.38	47.19
GSMUA_Achr3P19440_001	Banana	plastid	30.64	44.72
PGSC0003DMT400069641	Potato	mitochondrion	32.77	44.51
GSMUA_Achr10P...	Banana	cytosol	38.3	43.69
PGSC0003DMT400046652	Potato	plastid	35.32	41.92
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	37.02	39.91
Os11t0444900-01	Rice	cytosol, plastid	36.6	39.81
TraesCS6D01G198500.1	Wheat	plastid	33.19	39.0
TraesCS6B01G245800.1	Wheat	plastid	32.77	38.89
TraesCS6A01G217000.1	Wheat	plastid	33.19	38.81
GSMUA_Achr8P16400_001	Banana	plastid	33.19	38.61
Os11t0444700-01	Rice	cytosol	35.32	37.05
EES09698	Sorghum	cytosol	36.6	36.44
Zm00001d049157_P001	Maize	plastid	33.62	34.65
GSMUA_Achr6P06660_001	Banana	plastid	34.04	33.06
HORVU6Hr1G055230.3	Barley	cytosol	32.77	33.05
PGSC0003DMT400078796	Potato	cytosol	21.7	18.89
PGSC0003DMT400097584	Potato	nucleus	28.09	17.93
PGSC0003DMT400016330	Potato	nucleus	30.21	15.47
PGSC0003DMT400057688	Potato	nucleus	23.83	13.46
PGSC0003DMT400008036	Potato	nucleus	28.09	13.44
PGSC0003DMT400067817	Potato	cytosol	24.26	10.23
PGSC0003DMT400014442	Potato	nucleus	28.94	9.93
PGSC0003DMT400015310	Potato	nucleus	26.81	9.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400047888	EnsemblPlantsGene:PGSC0003DMG400018614	EntrezGene:102581671	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
PGSC:PGSC0003DMG400018614	RefSeq:XP_006357601.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000294F2F4
UniProt:M1BLL4	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018614]

Coordinates

chr5:+:10344271..10349358

Molecular Weight (calculated)

26137.9 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.472

Length

235 amino acids

Sequence
(BLAST)

001: MVSPSNNSHN FPLKFLCSYG GKIMPRQTDG KLRYYGGETR VLSVDRSISF AELLLKLGEM SGSTVSLRCQ LPNEDLDALV SITSDEDLVN LIEEYDHVST
101: ISSFLKIRAF LYPPKSTKKV VSPTPSIAST SSTNSTTISN PDATSSPSSF CSTVTSPPAS TRHHDCPRPY KKVTRNSLDE TINGRIRHIR TRSSPVMFPI
201: CPEKVTAKIP QYAYHHSHGN NSSHIYMIHH GNHWQ

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.