Factsheet for PGSC0003DMT400014442

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118870.2.1	Tomato	nucleus	89.34	96.08
Zm00001d003965_P001	Maize	mitochondrion	8.91	55.45
VIT_17s0000g03180.t01	Wine grape	nucleus	48.47	52.04
HORVU3Hr1G008310.1	Barley	cytosol	10.51	50.35
GSMUA_AchrUn_...	Banana	nucleus	25.55	45.34
KRH39133	Soybean	cytosol	44.23	45.29
KRH48572	Soybean	cytosol	42.19	45.09
PGSC0003DMT400015310	Potato	nucleus	39.85	41.43
CDY68695	Canola	nucleus	32.85	40.91
CDY40994	Canola	cytosol	33.87	40.7
CDY24442	Canola	cytosol	33.87	40.63
GSMUA_Achr10P...	Banana	nucleus	20.0	40.53
Bra022297.1-P	Field mustard	nucleus	33.58	40.14
CDX92217	Canola	cytosol	33.72	39.42
GSMUA_Achr8P18320_001	Banana	nucleus	29.78	39.38
AT3G18230.1	Thale cress	nucleus, plastid	38.25	39.34
Bra022296.1-P	Field mustard	cytosol	33.87	39.19
Bra037596.1-P	Field mustard	nucleus	36.2	38.57
CDY66514	Canola	nucleus	36.2	38.51
GSMUA_Achr2P07240_001	Banana	nucleus	29.78	37.09
PGSC0003DMT400067817	Potato	cytosol	27.88	34.29
GSMUA_Achr1P21240_001	Banana	nucleus	29.34	33.5
Os01t0139200-01	Rice	nucleus	32.12	32.79
Zm00001d039916_P010	Maize	nucleus	31.53	32.78
EES00348	Sorghum	nucleus	31.39	32.43
Zm00001d008591_P001	Maize	mitochondrion	31.09	32.03
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	32.7	32.0
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	31.82	31.01
PGSC0003DMT400069641	Potato	mitochondrion	7.74	30.64
TraesCS3A01G051800.1	Wheat	nucleus	31.39	30.54
TraesCS3D01G050900.1	Wheat	nucleus	28.76	29.71
TraesCS3B01G060500.1	Wheat	cytosol	28.47	29.46
PGSC0003DMT400057688	Potato	nucleus	17.81	29.33
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	9.93	28.94
PGSC0003DMT400046652	Potato	plastid	7.59	26.26
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	31.24	25.3
PGSC0003DMT400016330	Potato	nucleus	16.79	25.05
PGSC0003DMT400078796	Potato	cytosol	9.34	23.7
PGSC0003DMT400008036	Potato	nucleus	16.35	22.81
PGSC0003DMT400097584	Potato	nucleus	10.95	20.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400014442	EnsemblPlantsGene:PGSC0003DMG400005666	EntrezGene:102602895	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
PGSC:PGSC0003DMG400005666	RefSeq:XP_006341546.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002960437
UniProt:M1A484	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005666]

Coordinates

chr3:-:58368710..58371550

Molecular Weight (calculated)

74527.8 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.531

Length

685 amino acids

Sequence
(BLAST)

001: MDPPPIPSHI TATPIVTIAQ QNYSDSASSS PRSRQNDTWD QESLALVPGA KLRLICSYGG HIIPRPHDKS LCYVGGDTRI VVAERQSSLA DLQSRLSHTL
101: LNGRGFSLKY QLPNEELDSL VSVTTDEDLD NMIEEYDRAM SASPLKPSRL RLFLFLAKPE TAASMGCLLA DSKSETWFVD ALNNASLLSR GLSDSAAEGN
201: FLELERIPKS DSGVNLDQAQ NESLAANNRQ MAKNVIQEVQ STMPDSPMVE TTSSFESSVS SPSMPNLPQI KVRPEDGQMN ARFHDQMLGL DEQFSHMNVA
301: SNAQNLDDGY LHLAAQAATP PLPTVIGGAA VMSSATLVNA APATGEHHGR VISDDEKSDH GAPSGRRKPP LPLQPIQRKV GDGYSLPSPD SKHAGGYNLQ
401: SPDSVASDSS IASGTSFSKH TVYQDAPPAT GRETRMHPAV MDYNSQIQMQ QVQDSVVMQV PQQNQQQQQQ FVPANAHYIQ HTATGPVAVP SYYQMYAPPT
501: QQPLHQQMDQ QYQMYYVPVP QTQQYNLTVQ SNIADSSAVA SNQQLTPPNP TTVSSSAAFK EALPPIYPAR TIQSSKTEMP ANVYITATPA NQTVVQVPSS
601: QYHQQYYGLS QVPPPSQQMA TVPNSAANYG YEYSHPVHDQ VFYAQQTAPT LPSQYQTMTP NTAVLLSQAT AQLAAENTTT QNRTS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.