Factsheet for TraesCS3B01G060500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS5B01G340700.1
TraesCS6A01G412800.1
TraesCS6B01G462100.1
TraesCS6D01G397000.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7D01G056400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	20.69	95.8
TraesCS3A01G051800.1	Wheat	nucleus	96.53	90.77
TraesCS3D01G050900.1	Wheat	nucleus	88.37	88.24
Zm00001d003965_P001	Maize	mitochondrion	13.75	82.73
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	95.62	74.82
Os01t0139200-01	Rice	nucleus	72.96	71.98
EES00348	Sorghum	nucleus	70.39	70.29
Zm00001d039916_P010	Maize	nucleus	69.18	69.5
Zm00001d008591_P001	Maize	mitochondrion	69.64	69.32
GSMUA_Achr10P...	Banana	nucleus	27.34	53.55
GSMUA_AchrUn_...	Banana	nucleus	30.36	52.07
GSMUA_Achr8P18320_001	Banana	nucleus	40.18	51.35
GSMUA_Achr2P07240_001	Banana	nucleus	42.15	50.73
GSMUA_Achr1P21240_001	Banana	nucleus	44.26	48.83
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	44.56	42.14
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	41.84	39.4
VIT_01s0011g04140.t01	Wine grape	nucleus	35.2	33.43
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	12.99	33.08
CDY36115	Canola	cytosol, nucleus, vacuole	12.84	32.82
CDY24410	Canola	cytosol	12.39	31.78
KRG90906	Soybean	nucleus, plastid	34.44	31.62
KRH35888	Soybean	nucleus	33.69	31.54
VIT_17s0000g03180.t01	Wine grape	nucleus	30.06	31.19
PGSC0003DMT400015310	Potato	nucleus	30.36	30.5
TraesCS2B01G234400.1	Wheat	plastid	17.37	30.34
KRH39133	Soybean	cytosol	29.91	29.6
KRH48572	Soybean	cytosol	28.55	29.49
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	12.08	29.41
Solyc05g008830.2.1	Tomato	nucleus	28.4	29.24
KRH38173	Soybean	nucleus	28.55	28.99
CDY68695	Canola	nucleus	24.02	28.91
Solyc04g007460.2.1	Tomato	plastid	29.76	28.89
CDY25942	Canola	nucleus, plastid	27.34	28.82
VIT_14s0006g02490.t01	Wine grape	nucleus	22.51	28.71
Solyc03g118870.2.1	Tomato	nucleus	27.49	28.57
AT2G01190.1	Thale cress	nucleus, plastid	30.97	28.47
PGSC0003DMT400014442	Potato	nucleus	29.46	28.47
Bra024899.1-P	Field mustard	nucleus, plastid	31.12	28.37
CDY41073	Canola	nucleus, plastid	27.04	28.37
Bra017462.1-P	Field mustard	cytosol, plastid	27.49	28.35
CDY17690	Canola	nucleus, plastid	30.36	27.76
Solyc02g086360.2.1	Tomato	cytosol	22.96	27.29
PGSC0003DMT400067817	Potato	cytosol	22.96	27.29
Bra022297.1-P	Field mustard	nucleus	23.57	27.23
CDY40994	Canola	cytosol	23.11	26.84
CDY24442	Canola	cytosol	23.11	26.8
Bra037596.1-P	Field mustard	nucleus	25.98	26.75
CDY66514	Canola	nucleus	25.98	26.71
AT3G18230.1	Thale cress	nucleus, plastid	26.74	26.58
Bra006344.1-P	Field mustard	plastid	14.2	26.48
CDX92217	Canola	cytosol	23.41	26.45
Bra022296.1-P	Field mustard	cytosol	23.57	26.35
AT5G16220.1	Thale cress	plastid	17.82	24.79
CDX70680	Canola	plastid	16.62	23.86
TraesCS6B01G245800.1	Wheat	plastid	7.1	23.74
CDX78676	Canola	plastid	16.01	23.61
CDX69461	Canola	plastid	17.07	23.3
Bra008633.1-P	Field mustard	plastid	17.07	23.3
TraesCS4B01G031400.1	Wheat	plastid	8.16	21.34
TraesCS6B01G419500.1	Wheat	cytosol	13.44	18.05
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	9.97	16.26

Protein Annotations

EnsemblPlants:TraesCS3B01G060500.1	EnsemblPlantsGene:TraesCS3B01G060500	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:

Description

No Description!

Coordinates

chr3B:-:32285475..32288059

Molecular Weight (calculated)

71280.8 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.741

Length

662 amino acids

Sequence
(BLAST)

001: MCSFGGRIVP RPTDKSLCYL GGETRIVAVD RNASLADVHA RLSRSLLAGQ PFTLKYQLPN EDLDSLISVS TDEDLDNLVD EYDRVAAASS SGGAASRTSR
101: IRLFLFPAKP ESSSSLGSLL DDSSKSENWF VDALNSAISG SFDGIPRGIS TDSASVNCLL GLEDDNASQH SRSGVPNSGP AEDQRASQQK LAAAAAAARH
201: QHDVQSVPDS PMLDKNSSFG STSSAPSLSN LPPIRVRPED RQPVAPPVSV EDHFAQMGIS EQQGLPPQVM GYMQPPPQAP IPAMAMQAAS SISPSEPPSR
301: AFSDDDRSDH GGRMQQPPKQ EVPPTADPNN RAMFYNDMSP RNEMKRDMPV GTDAASYRAP APAPDAAASA AAAQPPPGYV YAQMQPQQQL QQPPQQQLQQ
401: QLQQQAQQQL QQQAQQQLPQ QIQQQPQQQL PPQLQQQAQQ QLQQQAQQQP PQPQQAHQPA PQQYVTAGNQ HFIHNPATGT FIPIQSYYQQ TVPQQAPQQQ
501: QSPAFDPNTG MYYIPMQRPN APQQYSIPAG AVAPMAAPTL VDSVPKPTVP IPQQYMKPEL QQPGMYRTAA PSAPAPGANT APNYAGMGYH HVMQSHHHPA
601: SQPPPTMAGN YGYPEYAADP RAQVFYSQAG APPASLPPQY QQPMGAPDAG GQADMNQNRG GS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.