Factsheet for TraesCS6B01G419500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G365200.1	Wheat	cytosol	95.54	96.32
TraesCS6A01G380500.1	Wheat	cytosol	95.13	88.16
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	91.28	81.67
Zm00001d051939_P001	Maize	cytosol	63.49	58.18
EES07730	Sorghum	cytosol	66.53	57.95
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	34.48	57.24
KRH57272	Soybean	cytosol	10.55	56.52
Zm00001d018447_P001	Maize	extracellular	62.47	56.2
VIT_14s0068g01740.t01	Wine grape	cytosol	5.27	35.62
Solyc02g091670.1.1	Tomato	cytosol	17.85	32.59
PGSC0003DMT400078796	Potato	cytosol	17.85	32.59
VIT_17s0000g07170.t01	Wine grape	cytosol	11.56	32.57
VIT_03s0097g00600.t01	Wine grape	nucleus	30.83	32.55
PGSC0003DMT400016330	Potato	nucleus	29.82	32.03
VIT_18s0001g08010.t01	Wine grape	nucleus	31.85	31.98
Solyc04g076820.1.1	Tomato	plastid	30.22	31.43
VIT_02s0033g00640.t01	Wine grape	cytosol	11.16	31.43
CDY31319	Canola	nucleus	17.65	31.18
KRH21700	Soybean	nucleus	27.79	31.14
KRH42038	Soybean	cytosol	30.02	31.09
KRH49860	Soybean	nucleus	29.82	31.08
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.76	30.68
KRH10652	Soybean	cytosol	27.59	30.49
Solyc01g106320.2.1	Tomato	extracellular	29.82	29.82
Bra024295.1-P	Field mustard	nucleus	25.96	29.49
PGSC0003DMT400008036	Potato	nucleus	29.21	29.33
KRH16903	Soybean	nucleus	20.69	28.81
CDY46804	Canola	nucleus	26.17	27.1
Bra031918.1-P	Field mustard	nucleus	25.96	27.0
CDX84525	Canola	nucleus	26.37	26.8
TraesCS6B01G245800.1	Wheat	plastid	10.75	26.77
KRH72507	Soybean	cytosol, nucleus, peroxisome	19.47	26.74
AT5G64430.1	Thale cress	nucleus	27.79	26.71
CDY58263	Canola	nucleus	25.76	26.51
CDY21590	Canola	nucleus	25.36	26.32
GSMUA_Achr1P05710_001	Banana	cytosol	25.76	26.08
CDX69896	Canola	nucleus	24.75	25.96
Bra009393.1-P	Field mustard	nucleus	24.75	25.74
AT5G09620.1	Thale cress	nucleus	25.76	23.92
TraesCS2B01G234400.1	Wheat	plastid	16.63	21.64
TraesCS4B01G031400.1	Wheat	plastid	10.34	20.16
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	14.2	17.24
TraesCS3B01G060500.1	Wheat	cytosol	18.05	13.44

Protein Annotations

EnsemblPlants:TraesCS6B01G419500.1	EnsemblPlantsGene:TraesCS6B01G419500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6B:+:691136665..691138146

Molecular Weight (calculated)

51815.9 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.468

Length

493 amino acids

Sequence
(BLAST)

001: MVSYGGRIQP RPHDNQLSYV NGDTKILSVD RPLRFPDFYA RLAGLAAARA DLCVKYQLPG EDLDALVSVT NDEDLDHLLI EYDRLHLFRA APGSGSSSRG
101: GSTPRLRVFL FTVAPPPRPA SPPKQPPQQD LQRDWYLDLK SASPPPLPQA LPPPPAQMQS QQMQQQPQMV MKQETAPVQS PPPAAPMAVP QSVVAASKTG
201: PDYLFGFDYG FMPPPAVKVK DPAGDPPKMR DNVPVEIPPK NEDRHPNPNP AADNNNNAMV SPAVSPAEFP RQIPDLDKLQ LADNATQQQQ QQLPPAPAPA
301: PAPQAAPAPA PVVAPAAPVP APLSRNGSDD SLTRAYPPAT ATPTAAAEYY VTKFPEKPPV PPPSSAPPAA AFLPVPGRYG SVAPGSGADP GPFFFIPAPP
401: HGYYTSANPG GTSYYAVPHN NGNANGNGTA PAPAVSSAQG YPQVAYDSNG RAVYYTGLLP QYPSAVNGGG MSASSAVLGT EPSKPVAVKP TVS

Best Arabidopsis Sequence Match ( AT5G09620.1 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.