Factsheet for Bra024295.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036832.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	Bra036832.1-P	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58263	Canola	nucleus	98.62	89.35
AT5G64430.1	Thale cress	nucleus	81.8	69.2
Bra031918.1-P	Field mustard	nucleus	75.12	68.78
KRH57272	Soybean	cytosol	13.59	64.13
Bra009393.1-P	Field mustard	nucleus	58.53	53.59
VIT_03s0097g00600.t01	Wine grape	nucleus	45.62	42.4
KRH21700	Soybean	nucleus	38.48	37.95
Solyc01g106320.2.1	Tomato	extracellular	43.09	37.93
PGSC0003DMT400008036	Potato	nucleus	42.63	37.68
KRH49860	Soybean	nucleus	41.01	37.63
KRH42038	Soybean	cytosol	41.01	37.4
KRH10652	Soybean	cytosol	38.02	37.0
Bra032936.1-P	Field mustard	plastid	13.59	32.96
Bra025209.1-P	Field mustard	mitochondrion	13.13	31.49
Bra016197.1-P	Field mustard	mitochondrion	11.29	29.52
Bra018071.1-P	Field mustard	plastid	11.75	27.87
Bra038608.1-P	Field mustard	nucleus	12.44	27.84
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.12	26.33
TraesCS6B01G419500.1	Wheat	cytosol	29.49	25.96
Bra000599.1-P	Field mustard	mitochondrion	15.67	25.66
TraesCS6D01G365200.1	Wheat	cytosol	28.8	25.56
Zm00001d051939_P001	Maize	cytosol	31.57	25.46
Bra022508.1-P	Field mustard	nucleus	16.36	25.18
Bra035855.1-P	Field mustard	cytosol	11.06	25.13
Zm00001d018447_P001	Maize	extracellular	31.57	25.0
EES07730	Sorghum	cytosol	32.03	24.56
TraesCS6A01G380500.1	Wheat	cytosol	29.72	24.25
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	14.52	24.23
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.9	23.23
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	29.26	23.05
GSMUA_Achr1P05710_001	Banana	cytosol	25.35	22.59
Bra029559.1-P	Field mustard	nucleus	17.51	19.24
Bra018513.1-P	Field mustard	nucleus	19.35	18.92
Bra006344.1-P	Field mustard	plastid	15.21	18.59
Bra008633.1-P	Field mustard	plastid	18.2	16.29
Bra022297.1-P	Field mustard	nucleus	18.43	13.96
Bra017462.1-P	Field mustard	cytosol, plastid	20.28	13.71
Bra022296.1-P	Field mustard	cytosol	18.43	13.51
Bra024899.1-P	Field mustard	nucleus, plastid	22.58	13.5
Bra037596.1-P	Field mustard	nucleus	19.12	12.91

Protein Annotations

EnsemblPlants:Bra024295.1	EnsemblPlants:Bra024295.1-P	EnsemblPlantsGene:Bra024295	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000253F403	UniProt:M4E691	MapMan:35.2

Description

AT5G64430 (E=1e-074) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA06:-:14774960..14776264

Molecular Weight (calculated)

46535.7 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.597

Length

434 amino acids

Sequence
(BLAST)

001: MCSYNGKIQP RPHDNQLTYV NGETKILSVD RGIRFPVLAS KLSAVCDDGG GGGGDVLFKY QLPGEDLDAL ISVTNDDDLE HMMHEYDRLL RVSSKPARMR
101: LFLFPSASSS GGFGSEGSTQ SDRDRFVEAL NTVRSRPESE KSVTAPPSNA DFLFGSEKVV SSPPPPSQPP HEVKLPVPVA LEPPLFNDPR VIQQEAVYRR
201: KSEDSGGGYF SPTYAAQNPA PPQPTIPITN QQAPPVTFWQ GSHNNNPGGV FPTTAPGLGL PEQPVYMIPS PSPTPHPASV YHAPPQQPQG VMRPVVTGQV
301: NQGGYYPYRE QHQPAYSMTQ PPVGVAKGQQ QQQQQPPPPF TSGPPPQPQY SAVPPPQQVV GLADTRAYTQ VTYAGGMGKQ VYYTEAPPPG PPQYHGIGLP
401: VTGGMSGLRT GPDGKLVAMN MAPKVSSQNS DSAV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.