Factsheet for TraesCS6D01G365200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G419500.1	Wheat	cytosol	96.32	95.54
TraesCS6A01G380500.1	Wheat	cytosol	95.91	88.16
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	91.41	81.13
Zm00001d051939_P001	Maize	cytosol	64.01	58.18
EES07730	Sorghum	cytosol	67.08	57.95
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	35.17	57.91
Zm00001d018447_P001	Maize	extracellular	62.99	56.2
KRH57272	Soybean	cytosol	10.02	53.26
VIT_14s0068g01740.t01	Wine grape	cytosol	5.32	35.62
VIT_17s0000g07170.t01	Wine grape	cytosol	11.86	33.14
VIT_03s0097g00600.t01	Wine grape	nucleus	30.88	32.33
Solyc02g091670.1.1	Tomato	cytosol	17.79	32.22
PGSC0003DMT400078796	Potato	cytosol	17.79	32.22
VIT_02s0033g00640.t01	Wine grape	cytosol	11.45	32.0
PGSC0003DMT400016330	Potato	nucleus	29.65	31.59
VIT_18s0001g08010.t01	Wine grape	nucleus	31.7	31.57
Solyc04g076820.1.1	Tomato	plastid	30.06	31.01
KRH21700	Soybean	nucleus	27.61	30.68
CDY31319	Canola	nucleus	17.38	30.47
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.77	30.43
KRH10652	Soybean	cytosol	27.4	30.04
KRH42038	Soybean	cytosol	29.24	30.04
KRH49860	Soybean	nucleus	29.04	30.02
Solyc01g106320.2.1	Tomato	extracellular	29.04	28.8
Bra024295.1-P	Field mustard	nucleus	25.56	28.8
KRH16903	Soybean	nucleus	20.65	28.53
PGSC0003DMT400008036	Potato	nucleus	28.63	28.51
CDY46804	Canola	nucleus	25.77	26.47
KRH72507	Soybean	cytosol, nucleus, peroxisome	19.43	26.46
Bra031918.1-P	Field mustard	nucleus	25.56	26.37
CDX84525	Canola	nucleus	25.97	26.19
AT5G64430.1	Thale cress	nucleus	27.4	26.12
CDY21590	Canola	nucleus	25.36	26.11
CDY58263	Canola	nucleus	25.36	25.89
CDX69896	Canola	nucleus	24.74	25.74
GSMUA_Achr1P05710_001	Banana	cytosol	25.56	25.67
Bra009393.1-P	Field mustard	nucleus	24.74	25.53
TraesCS6D01G198500.1	Wheat	plastid	10.22	25.0
AT5G09620.1	Thale cress	nucleus	25.36	23.35
TraesCS2D01G214600.1	Wheat	plastid	16.16	21.18
TraesCS4D01G029100.1	Wheat	plastid	10.02	19.92
TraesCS1D01G267100.1	Wheat	nucleus	13.91	18.58
TraesCS3D01G050900.1	Wheat	nucleus	16.56	12.22

Protein Annotations

EnsemblPlants:TraesCS6D01G365200.1	EnsemblPlantsGene:TraesCS6D01G365200	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6D:+:454633551..454635420

Molecular Weight (calculated)

51389.4 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.457

Length

489 amino acids

Sequence
(BLAST)

001: MVSYGGRIQP RPHDNQLSYV NGDTKILSID RPLRYPDFYA RLAGLAAARA DLCVKYQLPG EDLDALVSVT NDEDLDHLVI EYDRLHLFRA PAAPGSGGSS
101: RGGSTPRLRV FLFPVAPPPR PASPPKQQHQ QDLQREWYLD LKSASPPPLP QALPPPPQMQ SQQMQQPQVV MKQEAAPVQS PPPAVPMAVP QSVVAASKTG
201: PDYLFGFDYG FMPPPAVKVK DPAGEPPKMR ENVPVEIPPK NEDRHPNPAA DNNNNAMVSP AVSPAEFPRQ IPDLDKLQLA DNATQQQQQP PPAPAPAPAP
301: QAAPAPAPVV APAAPVPAPL SRNGSDDSLT RAYPPATATP TAAAEYYVTK FPEKPPVPPP SSAPPAAAFL PVPGRYGSVA PGSGADPGPF FFIPAPPHGY
401: YTSANPGGTS YYAVPHNNGN ANGNGTAPAP AASSAQGFPQ VAYDSNGRAV YYTGLLPQYP SAVNGGMSAS SAVLGTEPSK PVAVKPTVS

Best Arabidopsis Sequence Match ( AT5G09620.1 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.