Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58263 | Canola | nucleus | 76.41 | 81.84 |
| Bra024295.1-P | Field mustard | nucleus | 69.2 | 81.8 |
| CDX84525 | Canola | nucleus | 76.61 | 81.03 |
| CDY46804 | Canola | nucleus | 73.68 | 79.41 |
| Bra031918.1-P | Field mustard | nucleus | 73.1 | 79.11 |
| CDY31319 | Canola | nucleus | 42.5 | 78.14 |
| KRH57272 | Soybean | cytosol | 11.89 | 66.3 |
| AT5G09620.1 | Thale cress | nucleus | 59.26 | 57.25 |
| VIT_03s0097g00600.t01 | Wine grape | nucleus | 44.44 | 48.82 |
| KRH42038 | Soybean | cytosol | 43.66 | 47.06 |
| KRH21700 | Soybean | nucleus | 40.35 | 47.05 |
| KRH49860 | Soybean | nucleus | 43.27 | 46.93 |
| KRH10652 | Soybean | cytosol | 39.77 | 45.74 |
| Solyc01g106320.2.1 | Tomato | extracellular | 42.69 | 44.42 |
| PGSC0003DMT400008036 | Potato | nucleus | 42.5 | 44.4 |
| AT5G63130.2 | Thale cress | nucleus | 11.89 | 31.77 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 24.17 | 29.95 |
| Zm00001d018447_P001 | Maize | extracellular | 31.77 | 29.74 |
| Zm00001d051939_P001 | Maize | cytosol | 30.99 | 29.55 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 10.33 | 29.44 |
| AT1G70640.1 | Thale cress | cytosol | 9.94 | 29.31 |
| EES07730 | Sorghum | cytosol | 31.97 | 28.98 |
| TraesCS6A01G380500.1 | Wheat | cytosol | 29.04 | 28.01 |
| TraesCS6B01G419500.1 | Wheat | cytosol | 26.71 | 27.79 |
| TraesCS6D01G365200.1 | Wheat | cytosol | 26.12 | 27.4 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 29.24 | 27.22 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 25.34 | 26.69 |
| AT5G49920.1 | Thale cress | nucleus | 14.81 | 26.39 |
| HORVU3Hr1G075060.1 | Barley | cytosol, peroxisome | 14.23 | 24.58 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 12.67 | 23.9 |
| AT4G05150.1 | Thale cress | nucleus | 18.71 | 20.13 |
| AT5G16220.1 | Thale cress | plastid | 17.15 | 18.49 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 24.56 | 17.5 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 19.88 | 15.32 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:836564 | ProteinID:AED97892.1 | ArrayExpress:AT5G64430 | EnsemblPlantsGene:AT5G64430 |
| RefSeq:AT5G64430 | TAIR:AT5G64430 | RefSeq:AT5G64430-TAIR-G | EnsemblPlants:AT5G64430.1 | TAIR:AT5G64430.1 | EMBL:AY062534 |
| EMBL:AY092962 | EMBL:AY093313 | ProteinID:BAB11604.1 | EMBL:BT008878 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0009536 | GO:GO:0009941 | InterPro:IPR000270 | RefSeq:NP_201248.1 | InterPro:PB1_dom | PFAM:PF00564 |
| PO:PO:0000005 | PO:PO:0000293 | PRINTS:PR01217 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF2 | UniProt:Q9FGF3 |
| SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI00000A27A3 | SEG:seg | : | : |
Description
At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
Coordinates
chr5:-:25762160..25764420
Molecular Weight (calculated)
56444.3 Da
IEP (calculated)
5.791
GRAVY (calculated)
-0.732
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.