Factsheet for VIT_03s0097g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57272	Soybean	cytosol	12.63	64.13
KRH21700	Soybean	nucleus	50.32	53.41
Solyc01g106320.2.1	Tomato	extracellular	55.46	52.54
KRH42038	Soybean	cytosol	53.53	52.52
KRH10652	Soybean	cytosol	50.11	52.47
VIT_14s0068g01740.t01	Wine grape	cytosol	8.14	52.05
PGSC0003DMT400008036	Potato	nucleus	54.6	51.93
KRH49860	Soybean	nucleus	50.96	50.32
VIT_17s0000g07170.t01	Wine grape	cytosol	18.42	49.14
CDY31319	Canola	nucleus	29.12	48.75
VIT_18s0001g08010.t01	Wine grape	nucleus	50.11	47.66
VIT_02s0033g00640.t01	Wine grape	cytosol	17.56	46.86
CDY58263	Canola	nucleus	47.32	46.14
CDX84525	Canola	nucleus	47.54	45.77
Bra024295.1-P	Field mustard	nucleus	42.4	45.62
AT5G64430.1	Thale cress	nucleus	48.82	44.44
CDX69896	Canola	nucleus	43.04	42.77
CDY21590	Canola	nucleus	43.47	42.74
Bra009393.1-P	Field mustard	nucleus	43.25	42.62
Bra031918.1-P	Field mustard	nucleus	43.25	42.62
CDY46804	Canola	nucleus	43.25	42.44
AT5G09620.1	Thale cress	nucleus	44.33	38.98
VIT_00s0291g00050.t01	Wine grape	plastid	14.35	34.36
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	11.35	33.33
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	28.48	32.13
Zm00001d018447_P001	Maize	extracellular	37.47	31.93
Zm00001d051939_P001	Maize	cytosol	36.62	31.78
TraesCS6A01G380500.1	Wheat	cytosol	35.33	31.02
TraesCS6D01G365200.1	Wheat	cytosol	32.33	30.88
TraesCS6B01G419500.1	Wheat	cytosol	32.55	30.83
EES07730	Sorghum	cytosol	37.26	30.74
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	18.42	30.07
GSMUA_Achr1P05710_001	Banana	cytosol	31.05	29.77
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	34.9	29.58
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.63	24.58
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	17.13	20.67
VIT_14s0006g02490.t01	Wine grape	nucleus	21.2	19.08
VIT_17s0000g03180.t01	Wine grape	nucleus	24.84	18.18
VIT_01s0011g04140.t01	Wine grape	nucleus	26.12	17.5

Protein Annotations

EntrezGene:100254138	wikigene:100254138	Gene3D:3.10.20.90	MapMan:35.2	ProteinID:CCB58924	ProteinID:CCB58924.1
ncoils:Coil	UniProt:F6HW60	EMBL:FN596261	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	EntrezGene:LOC100254138	wikigene:LOC100254138	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066
PANTHER:PTHR31066:SF2	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00015CCF44	ArrayExpress:VIT_03s0097g00600	EnsemblPlantsGene:VIT_03s0097g00600
EnsemblPlants:VIT_03s0097g00600.t01	unigene:Vvi.21465	RefSeq:XP_002263901	RefSeq:XP_002263901.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:11039154..11040769

Molecular Weight (calculated)

50372.4 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.489

Length

467 amino acids

Sequence
(BLAST)

001: MENYTYTSYA DSGESSPRSR ELEFENSGAA SWEDQPLHQP SKVKFMCSYG GKIQPRPHDN QLSYTGGETK ILSVDRSIKF SPLINKLCAL CEADVCFKYQ
101: LPGEDLDALI SVTNDDDLEH MMHEYDRLCR PSAKPARLRL FLFPATPPSV GSGDMKTERE RFFEAMNSGP IQSVDATSPP ATAPPSNVDF LFGLDKGVSP
201: PAPVAKLPVP VPEPPVPAEI PSLVNPGGDG RVFAADLGVN QAEIQRQIQD LQRLQISAQE QGAYQRKSDD NMYGGYAGDY YVQKMPEKAP PQSTIPATVP
301: ATYWQEKRAP GGGFPGGVPA TPGLQEQPVY MIPAPASVYH TPVARPVTGQ SGQGYYAMRM GPDVYREQTP MYSVMQQPPV QATMPAPAPK LPNYSEGLGM
401: GRPSGVGVAD TGYTQVAYDS QGRQVYYTAP GGVVAPYQTM AAVSTTSGPL NQESGKVTAA KLSQASV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.