Factsheet for VIT_14s0006g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003965_P001	Maize	mitochondrion	10.21	48.18
Solyc02g086360.2.1	Tomato	cytosol	47.01	43.81
PGSC0003DMT400067817	Potato	cytosol	47.01	43.81
HORVU3Hr1G008310.1	Barley	cytosol	11.75	42.66
VIT_01s0011g04140.t01	Wine grape	nucleus	44.7	33.29
VIT_17s0000g03180.t01	Wine grape	nucleus	39.5	32.13
Bra006344.1-P	Field mustard	plastid	21.58	31.55
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	9.63	31.45
VIT_14s0068g01740.t01	Wine grape	cytosol	4.24	30.14
Bra008633.1-P	Field mustard	plastid	28.13	30.1
CDX69461	Canola	plastid	28.13	30.1
GSMUA_AchrUn_...	Banana	nucleus	22.35	30.05
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	16.38	29.72
VIT_00s0291g00050.t01	Wine grape	plastid	10.98	29.23
GSMUA_Achr2P07240_001	Banana	nucleus	30.64	28.91
CDX78676	Canola	plastid	24.86	28.73
CDX70680	Canola	plastid	25.43	28.63
GSMUA_Achr8P18320_001	Banana	nucleus	28.52	28.57
GSMUA_Achr10P...	Banana	nucleus	18.5	28.4
AT5G16220.1	Thale cress	plastid	26.01	28.36
VIT_17s0000g07170.t01	Wine grape	cytosol	9.06	26.86
VIT_02s0033g00640.t01	Wine grape	cytosol	8.86	26.29
GSMUA_Achr1P21240_001	Banana	nucleus	28.71	24.83
Zm00001d039916_P010	Maize	nucleus	31.02	24.43
Zm00001d008591_P001	Maize	mitochondrion	31.02	24.21
EES00348	Sorghum	nucleus	30.64	23.98
Os01t0139200-01	Rice	nucleus	30.64	23.7
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	31.21	23.14
TraesCS3B01G060500.1	Wheat	cytosol	28.71	22.51
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	30.44	22.48
TraesCS3A01G051800.1	Wheat	nucleus	30.25	22.3
TraesCS3D01G050900.1	Wheat	nucleus	28.13	22.02
VIT_18s0001g08010.t01	Wine grape	nucleus	20.23	21.38
VIT_03s0097g00600.t01	Wine grape	nucleus	19.08	21.2
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	30.64	18.79
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	12.14	16.28

Protein Annotations

EntrezGene:100246403	wikigene:100246403	MapMan:35.2	ProteinID:CCB57693	ProteinID:CCB57693.1	UniProt:F6HSQ2
EMBL:FN596245	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	EntrezGene:LOC100246403
wikigene:LOC100246403	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF14	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0001984C80	ArrayExpress:VIT_14s0006g02490	EnsemblPlantsGene:VIT_14s0006g02490	EnsemblPlants:VIT_14s0006g02490.t01	unigene:Vvi.17391
RefSeq:XP_002281064	RefSeq:XP_002281064.1	RefSeq:XP_010660394.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:20100734..20103986

Molecular Weight (calculated)

56341.1 Da

IEP (calculated)

5.650

GRAVY (calculated)

-0.373

Length

519 amino acids

Sequence
(BLAST)

001: MESPPPPPNS GAKLRLMCSY NGHILPRRHA KSLCYAGGDT RIVAVDRRAA ASLSALTTQL SQTLQIPYQF TLKYQLPHHD LDSLISLTTD DDLLNMFEEY
101: DNLPASPTPS RIRLFLFPSK PDSPGSVLHD PKSESWFLDA LNSSAKVMQK GNSSDSGFGH SDPFPAENLV GISSGGLDSF SVPESVVLET NSSFGSTSSS
201: VSVSNLAAMR AHVEDSGVNL QDKKVHLPLS ESIESETVVA SVISHPQTGG HEDPVVNIPL VDNWDSSKPV GSESNVSDAF ARIQIHKAVE VSGFPSSLQL
301: DQQQQQLQFV PAGAQYITHY PTGPVPVSSY YPIYQPQLQQ QQPTYYQSNR PYPVYLLPVR PPQPYNFSMQ GSLIDSATVA SSQPPMHLNA TMIPSQVVYK
401: EVTAAPPLPD LATKVTGTAP GVTPLVHVPS NENQQQFVSI PQIHHPTQSI PIASMEAANY SAFEDDPAQS QIYKSQPPAP ILPSQYQTMT NATKALLSEA
501: LAQSQADNIK QQIRTPQPK

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.