Factsheet for GSMUA_Achr6P09850_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P19900_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18320_001	Banana	nucleus	55.05	74.71
GSMUA_Achr10P...	Banana	nucleus	35.28	73.37
Zm00001d003965_P001	Maize	mitochondrion	10.81	69.09
GSMUA_AchrUn_...	Banana	nucleus	37.27	67.88
HORVU3Hr1G008310.1	Barley	cytosol	13.66	67.13
GSMUA_Achr2P07240_001	Banana	nucleus	44.95	57.45
GSMUA_Achr1P21240_001	Banana	nucleus	47.51	55.67
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	54.77	55.0
EES00348	Sorghum	nucleus	45.95	48.72
Os01t0139200-01	Rice	nucleus	46.09	48.29
Zm00001d039916_P010	Maize	nucleus	45.09	48.1
Zm00001d008591_P001	Maize	mitochondrion	44.95	47.52
TraesCS3D01G050900.1	Wheat	nucleus	41.25	43.74
TraesCS3A01G051800.1	Wheat	nucleus	43.67	43.61
TraesCS3B01G060500.1	Wheat	cytosol	39.4	41.84
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	45.66	37.94
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	13.8	37.31
GSMUA_Achr4P33650_001	Banana	mitochondrion	16.36	37.1
CDY24410	Canola	cytosol	13.51	36.82
CDY36115	Canola	cytosol, nucleus, vacuole	13.51	36.68
VIT_01s0011g04140.t01	Wine grape	nucleus	35.42	35.72
KRH35888	Soybean	nucleus	34.28	34.09
VIT_17s0000g03180.t01	Wine grape	nucleus	30.87	34.01
PGSC0003DMT400015310	Potato	nucleus	31.86	33.99
Solyc04g007460.2.1	Tomato	plastid	32.72	33.72
KRG90906	Soybean	nucleus, plastid	34.42	33.56
GSMUA_Achr3P19440_001	Banana	plastid	7.68	33.54
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	12.94	33.46
Solyc05g008830.2.1	Tomato	nucleus	30.44	33.28
KRH38173	Soybean	nucleus	30.73	33.13
CDY25942	Canola	nucleus, plastid	29.45	32.96
KRH39133	Soybean	cytosol	31.15	32.74
KRH48572	Soybean	cytosol	29.59	32.45
CDY41073	Canola	nucleus, plastid	28.88	32.17
Bra017462.1-P	Field mustard	cytosol, plastid	29.3	32.09
Solyc03g118870.2.1	Tomato	nucleus	28.88	31.87
PGSC0003DMT400014442	Potato	nucleus	31.01	31.82
Bra024899.1-P	Field mustard	nucleus, plastid	32.72	31.68
AT2G01190.1	Thale cress	nucleus, plastid	32.01	31.25
CDY17690	Canola	nucleus, plastid	32.01	31.08
VIT_14s0006g02490.t01	Wine grape	nucleus	22.48	30.44
CDY68695	Canola	nucleus	23.04	29.45
GSMUA_Achr8P16400_001	Banana	plastid	8.25	28.71
GSMUA_Achr10P...	Banana	cytosol	8.39	28.64
CDY40994	Canola	cytosol	23.19	28.6
CDY24442	Canola	cytosol	23.19	28.55
Bra022297.1-P	Field mustard	nucleus	23.19	28.45
AT3G18230.1	Thale cress	nucleus, plastid	26.6	28.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	8.68	27.98
Bra022296.1-P	Field mustard	cytosol	23.47	27.87
CDX92217	Canola	cytosol	23.19	27.82
Solyc02g086360.2.1	Tomato	cytosol	21.76	27.47
Bra037596.1-P	Field mustard	nucleus	25.04	27.37
CDY66514	Canola	nucleus	25.04	27.33
PGSC0003DMT400067817	Potato	cytosol	21.48	27.11
Bra006344.1-P	Field mustard	plastid	13.66	27.04
CDX70680	Canola	plastid	16.64	25.38
AT5G16220.1	Thale cress	plastid	16.93	25.0
CDX78676	Canola	plastid	15.93	24.94
CDX69461	Canola	plastid	16.79	24.33
Bra008633.1-P	Field mustard	plastid	16.79	24.33
GSMUA_Achr6P06660_001	Banana	plastid	7.97	23.14
GSMUA_Achr3P21900_001	Banana	nucleus	10.67	20.38
GSMUA_Achr11P...	Banana	plastid	8.82	20.2
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	10.24	17.39
GSMUA_Achr1P05710_001	Banana	cytosol	11.24	16.22

Protein Annotations

EnsemblPlants:GSMUA_Achr6P09850_001	EnsemblPlants:GSMUA_Achr6T09850_001	EnsemblPlantsGene:GSMUA_Achr6G09850_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002962509	UniProt:M0T5N4	MapMan:35.2

Description

Putative PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G09850_001]

Coordinates

chr6:+:6613798..6616623

Molecular Weight (calculated)

74723.8 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.442

Length

703 amino acids

Sequence
(BLAST)

001: MNNIKLFLFD ISTVPFISLL TTLSHRIDLR EINHKNPHSC PQSKPPFFPY PSIRSGPGDP SPAPIMESTA ALAAVSVGGS GHGYPDSVDS SPRSRGGDSW
101: DEPFTSSAAA SSRLRVMCSY GGRIVPRPTD NSLCYLGGET RMVIVDRHSS LADLSAKLSR DLLGGRPFSL KYQLPNEDLD SLISVTTDED LENMIEELDR
201: ISAATAALAS SIGGGSARSP RLRLFLFPSI SDSAPSSAIG SLLDDSKSET WFVDALNSAI GGMGVDALST DSASVNCLLG LEDDSSVHSR SGGGGGGGHS
301: EAEQLVLPRP DSSGKLVRHG QDVPGSPMLD QASSFGSTSS APSLSNLPPI PVPTDGRAAA EQRISGIDDH FAHMGLSPDS ATRPDEGFKE PRYAHHHQPP
401: PPIPLPTASP PSSTTSPIEN LNRDFSDDDR SDHGGVLRPS QATEPTQVDA PTPDPVSRPT YLNPSSDAMY RGPSPVRDAS GYVMASPQLE QLQQQQSHPH
501: LNQQQQPQLT SANPHYIHHH PAAGTVVPMP SYYSIAAHSM QQSPQTYQID PQIPMYYMPV RHTSPYTLGT VQPNLMDPNY ISSTAAPASG IVTKPDLTSY
601: YKTAATAPAP AAMQPQLIRV AANQTHPYAG TGYNVIQHPH LSQTPATMAN FGYEAAAGPV HPQMYYSQVS SQAALSPQYQ TVSSTTTIPD AAALGDSNTS
701: RTS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.