Factsheet for Bra024899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018071.1-P
Bra027190.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	Bra027190.1-P	AT3G16120.1	21798944
AT2G01190.1	Bra018071.1-P	AT3G48240.1	21798944
AT2G01190.1	Bra028662.1-P	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17690	Canola	nucleus, plastid	97.8	98.07
AT2G01190.1	Thale cress	nucleus, plastid	81.41	82.08
Bra017462.1-P	Field mustard	cytosol, plastid	70.39	79.59
Zm00001d003965_P001	Maize	mitochondrion	8.68	57.27
VIT_01s0011g04140.t01	Wine grape	nucleus	51.38	53.52
KRH35888	Soybean	nucleus	48.9	50.21
HORVU3Hr1G008310.1	Barley	cytosol	9.78	49.65
KRG90906	Soybean	nucleus, plastid	48.48	48.82
GSMUA_AchrUn_...	Banana	nucleus	24.52	46.11
Solyc05g008830.2.1	Tomato	nucleus	40.22	45.41
GSMUA_Achr10P...	Banana	nucleus	19.83	42.6
KRH38173	Soybean	nucleus	37.47	41.72
GSMUA_Achr8P18320_001	Banana	nucleus	29.06	40.73
Bra022297.1-P	Field mustard	nucleus	31.27	39.62
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	14.19	39.62
Bra022296.1-P	Field mustard	cytosol	31.96	39.19
GSMUA_Achr2P07240_001	Banana	nucleus	29.34	38.73
Bra037596.1-P	Field mustard	nucleus	33.2	37.48
Bra025209.1-P	Field mustard	mitochondrion	8.82	35.36
Bra032936.1-P	Field mustard	plastid	8.68	35.2
EES00348	Sorghum	nucleus	31.41	34.39
Zm00001d039916_P010	Maize	nucleus	31.13	34.29
GSMUA_Achr1P21240_001	Banana	nucleus	28.1	34.0
Os01t0139200-01	Rice	nucleus	31.27	33.83
Zm00001d008591_P001	Maize	mitochondrion	30.72	33.53
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	32.23	33.43
Bra038608.1-P	Field mustard	nucleus	8.82	32.99
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	31.68	32.72
TraesCS3D01G050900.1	Wheat	nucleus	29.48	32.28
TraesCS3A01G051800.1	Wheat	nucleus	31.27	32.24
Bra029559.1-P	Field mustard	nucleus	17.08	31.39
Bra016197.1-P	Field mustard	mitochondrion	7.16	31.33
Bra018071.1-P	Field mustard	plastid	7.85	31.15
TraesCS3B01G060500.1	Wheat	cytosol	28.37	31.12
Bra018513.1-P	Field mustard	nucleus	18.73	30.63
Bra006344.1-P	Field mustard	plastid	14.88	30.42
Bra035855.1-P	Field mustard	cytosol	7.71	29.32
Bra008633.1-P	Field mustard	plastid	18.46	27.63
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	31.13	26.71
Bra031918.1-P	Field mustard	nucleus	16.53	25.32
Bra022508.1-P	Field mustard	nucleus	9.64	24.82
Bra000599.1-P	Field mustard	mitochondrion	8.82	24.15
Bra009393.1-P	Field mustard	nucleus	15.01	23.0
Bra024295.1-P	Field mustard	nucleus	13.5	22.58

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.2	EnsemblPlantsGene:Bra024899	EnsemblPlants:Bra024899.1	EnsemblPlants:Bra024899.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	InterPro:IPR000270	UniProt:M4E7Z3	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS51745	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000253FA0A
SEG:seg	:	:	:	:	:

Description

AT2G01190 (E=1e-241) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA06:-:24173965..24176232

Molecular Weight (calculated)

78463.3 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.703

Length

726 amino acids

Sequence
(BLAST)

001: MEPPPPSLSS TAVASTVVPT TTVPVPPPPH ATTSYPESLD SSPRSRTTDG WDDLHAPSAV SSKLRLMCSY GGHILPRPHD KSLCYMGGDT RIVVVDRNSS
101: LASLVARLSN KLLDGRSFTL KYQLPSEDLD SLISVTTDED LENMIEEYDR TISAPNSTKP SRLRLFLFTS KPEATQSMGQ ILESSAKSDD WFLNALNSAG
201: LLNRGFSDSD ANVNRLLGLD DGLRSSPGDN GDNLDSSVKD DDGSVKSGKQ QQQIQEPSPP QLPQQQQGGQ DVHSMPDSPM LDTSSSFGST SSSPLPANLP
301: PIRVHVEEAG GVKGMQDQRM GIEEQFARFN VGNKQQQVQQ EDGFAAISSP PPPLPVTISL PAAPVNAAAA NVSSEFQTRV FSDDERSDHG VPAGYRKPPT
401: PRSQPQNLPP QQVHHVKSNS GGHELPSPHS VSSDSSMNNP VYQQRPSLYQ DPMSQMPSGS TVVTGMINPS DPNTLLPQNH MQNQDPGYIL HPQFEQQSAP
501: SQPQQQQQQQ FIHAAAPPQY IHHHPSGGLP MQTYIQVYPS QQPQSFHRQP GQLDQQQPYP AVYYVTTPVP PRPYNMAVPQ SGSVSEAPGS VHSNHPQAPP
601: NSMMAPPPNS QLRSVPGGKP EAGVYTTPQG MAGAQMVHQI PTNQQQFMGY SQIHHPPQSG SAAIPSYGYE YADNAHKQMF YTQPVGHAQS QTMTGPPPAM
701: VLPDGSAAAK LPAENMTQQI RSSQPL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.