Factsheet for Bra016197.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66304	Canola	cytosol	97.59	97.59
CDY61217	Canola	cytosol, mitochondrion	93.98	93.98
CDY20093	Canola	extracellular, plasma membrane	95.18	81.44
AT1G70640.1	Thale cress	cytosol	72.89	69.54
Bra032936.1-P	Field mustard	plastid	54.22	50.28
Bra025209.1-P	Field mustard	mitochondrion	51.2	46.96
GSMUA_Achr3P19440_001	Banana	plastid	42.17	43.48
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	50.0	38.07
Bra018071.1-P	Field mustard	plastid	41.57	37.7
Bra038608.1-P	Field mustard	nucleus	42.77	36.6
GSMUA_Achr10P...	Banana	cytosol	45.18	36.41
GSMUA_Achr8P16400_001	Banana	plastid	42.77	35.15
TraesCS6B01G245800.1	Wheat	plastid	40.96	34.34
TraesCS6A01G217000.1	Wheat	plastid	40.96	33.83
Bra035855.1-P	Field mustard	cytosol	38.55	33.51
TraesCS6D01G198500.1	Wheat	plastid	40.36	33.5
Os11t0444900-01	Rice	cytosol, plastid	43.37	33.33
Os11t0444700-01	Rice	cytosol	43.37	32.14
GSMUA_Achr6P06660_001	Banana	plastid	45.18	30.99
EES09698	Sorghum	cytosol	43.98	30.93
Zm00001d049157_P001	Maize	plastid	40.36	29.39
HORVU6Hr1G055230.3	Barley	cytosol	40.96	29.18
Bra000599.1-P	Field mustard	mitochondrion	34.94	21.89
Bra022508.1-P	Field mustard	nucleus	36.14	21.28
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	28.31	18.08
Bra029559.1-P	Field mustard	nucleus	31.93	13.42
Bra018513.1-P	Field mustard	nucleus	33.73	12.61
Bra024295.1-P	Field mustard	nucleus	29.52	11.29
Bra009393.1-P	Field mustard	nucleus	31.93	11.18
Bra006344.1-P	Field mustard	plastid	22.29	10.42
Bra031918.1-P	Field mustard	nucleus	29.52	10.34
Bra022297.1-P	Field mustard	nucleus	29.52	8.55
Bra022296.1-P	Field mustard	cytosol	29.52	8.28
Bra037596.1-P	Field mustard	nucleus	30.12	7.78
Bra008633.1-P	Field mustard	plastid	22.29	7.63
Bra017462.1-P	Field mustard	cytosol, plastid	28.31	7.32
Bra024899.1-P	Field mustard	nucleus, plastid	31.33	7.16

Protein Annotations

EnsemblPlants:Bra016197.1	EnsemblPlants:Bra016197.1-P	EnsemblPlantsGene:Bra016197	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00025412BF	UniProt:M4DI70	MapMan:35.2

Description

AT1G70640 (E=4e-047) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA07:+:18919729..18920295

Molecular Weight (calculated)

18158.7 Da

IEP (calculated)

8.577

GRAVY (calculated)

-0.242

Length

166 amino acids

Sequence
(BLAST)

001: MTTVKFLCSY GGRIIPRYPD NKLLCHGGHT RVLSVKRSIS FAELAVKLGE VCGMKVISLR CQLPTDDLDA LVTVSSDEDL ANLMEEYDLA ATALKIRVFL
101: SPPLSTTSSS SSSNSSTSRS CSPSSPSTVD PKTCPVCVER SHHRNTNKGC YVQRSPSRDQ LYLVRN

Best Arabidopsis Sequence Match ( AT1G70640.1 )
(BLAST)

001: MVPNTTTVKF LCSYGGRITP RYPDGKLRYQ GGDTRVLSVT RAISFTELKK KLGEICGIAV TSLRCQLPTD DLDALVTVRS DEDLKNLMEE YDLAITAQVK
101: IHVFLSPLKS TRTTANSSPP PSTTSSSSSK SRSRSPPSPS TPETCPSCVE RSIRNNGCYV HRSPSHNQLY FINN

Arabidopsis Description

At1g70640 [Source:UniProtKB/TrEMBL;Acc:Q9S843]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.