Factsheet for GSMUA_Achr11P12840_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19440_001	Banana	plastid	47.25	63.98
GSMUA_Achr10P...	Banana	cytosol	60.09	63.59
GSMUA_Achr8P16400_001	Banana	plastid	52.75	56.93
KRH29762	Soybean	plastid	28.44	52.1
CDY66304	Canola	cytosol	38.99	51.2
Bra032936.1-P	Field mustard	plastid	41.74	50.84
CDY28543	Canola	plastid	40.83	50.57
TraesCS6D01G198500.1	Wheat	plastid	46.33	50.5
CDY48987	Canola	plastid	41.28	50.28
TraesCS6A01G217000.1	Wheat	plastid	46.33	50.25
Bra016197.1-P	Field mustard	mitochondrion	38.07	50.0
Os11t0444900-01	Rice	cytosol, plastid	49.54	50.0
TraesCS6B01G245800.1	Wheat	plastid	45.41	50.0
CDY61217	Canola	cytosol, mitochondrion	38.07	50.0
CDX83621	Canola	mitochondrion	41.28	49.72
VIT_00s0291g00050.t01	Wine grape	plastid	44.04	49.23
GSMUA_Achr6P06660_001	Banana	plastid	53.21	47.93
CDY13638	Canola	mitochondrion	38.99	46.96
Bra025209.1-P	Field mustard	mitochondrion	38.99	46.96
Os11t0444700-01	Rice	cytosol	48.17	46.88
KRH45586	Soybean	plastid	38.99	46.7
Zm00001d049157_P001	Maize	plastid	46.33	44.3
CDY20093	Canola	extracellular, plasma membrane	38.99	43.81
EES09698	Sorghum	cytosol	47.25	43.64
AT1G70640.1	Thale cress	cytosol	34.4	43.1
HORVU6Hr1G055230.3	Barley	cytosol	45.41	42.49
KRH69636	Soybean	plastid	40.37	41.51
KRH74522	Soybean	nucleus	41.74	39.39
Solyc05g013530.2.1	Tomato	plastid	38.53	38.36
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	39.91	37.02
GSMUA_Achr11P...	Banana	plastid	27.52	19.54
GSMUA_Achr4P33650_001	Banana	mitochondrion	25.69	18.06
GSMUA_Achr3P21900_001	Banana	nucleus	29.82	17.66
GSMUA_Achr10P...	Banana	nucleus	26.61	17.16
GSMUA_AchrUn_...	Banana	nucleus	26.61	15.03
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.23	13.29
GSMUA_Achr2P07240_001	Banana	nucleus	26.15	10.36
GSMUA_Achr1P05710_001	Banana	cytosol	22.48	10.06
GSMUA_Achr8P18320_001	Banana	nucleus	23.85	10.04
GSMUA_Achr1P21240_001	Banana	nucleus	24.31	8.83
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	27.98	8.68
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	27.52	8.57

Protein Annotations

EnsemblPlants:GSMUA_Achr11P12840_001	EnsemblPlants:GSMUA_Achr11T12840_001	EnsemblPlantsGene:GSMUA_Achr11G12840_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000295CAE3	UniProt:M0RRR4	MapMan:35.2

Description

PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G12840_001]

Coordinates

chr11:+:12078887..12079686

Molecular Weight (calculated)

23724.3 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.293

Length

218 amino acids

Sequence
(BLAST)

001: MKERSEAGMA GTSSSSSSPC ASFGSLDDVS VKPTRAIKFL CSYGGKILPR YPDGKLRYVG GHTRLLAVDR SISFSELQVK LSELCGWGAV SLRCQLPTED
101: LDALISVTSD EDLANLVEEY DIASRDRPSP LKIRAFLFLT PPSLSSSSRP SHKASPTIPI STGRPPFIAT ERCVHWVSVP PKLYSRYGMP AASTTVGHTR
201: FHSRHHHGHG SPRASKLM

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.