Factsheet for TraesCS6B01G245800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G198500.1	Wheat	plastid	95.45	94.5
TraesCS6A01G217000.1	Wheat	plastid	94.95	93.53
HORVU6Hr1G055230.3	Barley	cytosol	92.42	78.54
Os11t0444900-01	Rice	cytosol, plastid	68.69	62.96
Os11t0444700-01	Rice	cytosol	67.17	59.38
EES09698	Sorghum	cytosol	65.15	54.66
GSMUA_Achr3P19440_001	Banana	plastid	44.44	54.66
Zm00001d049157_P001	Maize	plastid	59.09	51.32
GSMUA_Achr10P...	Banana	cytosol	48.99	47.09
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	50.0	45.41
CDY66304	Canola	cytosol	35.35	42.17
GSMUA_Achr8P16400_001	Banana	plastid	42.93	42.08
KRH29762	Soybean	plastid	25.25	42.02
CDY61217	Canola	cytosol, mitochondrion	34.34	40.96
Bra016197.1-P	Field mustard	mitochondrion	34.34	40.96
CDY28543	Canola	plastid	36.36	40.91
CDX83621	Canola	mitochondrion	37.37	40.88
Bra032936.1-P	Field mustard	plastid	36.87	40.78
CDY48987	Canola	plastid	36.36	40.22
KRH45586	Soybean	plastid	36.87	40.11
VIT_00s0291g00050.t01	Wine grape	plastid	39.39	40.0
CDY13638	Canola	mitochondrion	35.86	39.23
Bra025209.1-P	Field mustard	mitochondrion	35.86	39.23
AT1G70640.1	Thale cress	cytosol	32.83	37.36
KRH69636	Soybean	plastid	38.89	36.32
GSMUA_Achr6P06660_001	Banana	plastid	43.94	35.95
CDY20093	Canola	extracellular, plasma membrane	34.85	35.57
KRH74522	Soybean	nucleus	40.4	34.63
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	38.89	32.77
Solyc05g013530.2.1	Tomato	plastid	35.35	31.96
TraesCS4B01G031400.1	Wheat	plastid	25.76	20.16
TraesCS2B01G234400.1	Wheat	plastid	28.28	14.78
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	26.26	12.81
TraesCS6B01G419500.1	Wheat	cytosol	26.77	10.75
TraesCS3B01G060500.1	Wheat	cytosol	23.74	7.1

Protein Annotations

EnsemblPlants:TraesCS6B01G245800.1	EnsemblPlantsGene:TraesCS6B01G245800	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6B:+:438406713..438407408

Molecular Weight (calculated)

21673.8 Da

IEP (calculated)

8.301

GRAVY (calculated)

-0.387

Length

198 amino acids

Sequence
(BLAST)

001: MAGASSWSSS CSCTSSLGSL DDDDVVCVVK PGSPGAAEGS VKFLCSYGGM ILPRHPDAAL RYVGGNNRVL SVDRSLQFYE LQRKLMDMCG CEAMSLRCQL
101: PTEDLDALVS VTTNDDLGHL LEEYDAASRD RLQPLKIRAF LFPRSKTPPL SPSTPSSRPT PAYVRHQHHT ARPPPARVHS GHRRPHQLLL LHNGSRLQ

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.