Factsheet for GSMUA_Achr3P19440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06660_001	Banana	plastid	74.53	49.59
KRH29762	Soybean	plastid	35.4	47.9
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	63.98	47.25
TraesCS6D01G198500.1	Wheat	plastid	56.52	45.5
TraesCS6A01G217000.1	Wheat	plastid	56.52	45.27
TraesCS6B01G245800.1	Wheat	plastid	54.66	44.44
GSMUA_Achr10P...	Banana	cytosol	55.9	43.69
CDY66304	Canola	cytosol	44.72	43.37
Os11t0444900-01	Rice	cytosol, plastid	57.76	43.06
CDY28543	Canola	plastid	46.58	42.61
GSMUA_Achr8P16400_001	Banana	plastid	53.42	42.57
Bra032936.1-P	Field mustard	plastid	47.2	42.46
CDY61217	Canola	cytosol, mitochondrion	43.48	42.17
Bra016197.1-P	Field mustard	mitochondrion	43.48	42.17
CDY48987	Canola	plastid	46.58	41.9
Os11t0444700-01	Rice	cytosol	57.14	41.07
CDX83621	Canola	mitochondrion	45.96	40.88
AT1G70640.1	Thale cress	cytosol	44.1	40.8
CDY13638	Canola	mitochondrion	44.72	39.78
Bra025209.1-P	Field mustard	mitochondrion	44.72	39.78
Zm00001d049157_P001	Maize	plastid	55.9	39.47
EES09698	Sorghum	cytosol	57.76	39.41
KRH45586	Soybean	plastid	43.48	38.46
VIT_00s0291g00050.t01	Wine grape	plastid	45.96	37.95
HORVU6Hr1G055230.3	Barley	cytosol	54.04	37.34
CDY20093	Canola	extracellular, plasma membrane	44.1	36.6
KRH69636	Soybean	plastid	45.34	34.43
Solyc05g013530.2.1	Tomato	plastid	44.72	32.88
KRH74522	Soybean	nucleus	44.72	31.17
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	44.72	30.64
GSMUA_Achr11P...	Banana	plastid	33.54	17.59
GSMUA_Achr4P33650_001	Banana	mitochondrion	31.68	16.45
GSMUA_Achr10P...	Banana	nucleus	33.54	15.98
GSMUA_Achr3P21900_001	Banana	nucleus	34.78	15.22
GSMUA_AchrUn_...	Banana	nucleus	33.54	13.99
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	32.3	12.56
GSMUA_Achr1P05710_001	Banana	cytosol	29.81	9.86
GSMUA_Achr2P07240_001	Banana	nucleus	32.3	9.45
GSMUA_Achr8P18320_001	Banana	nucleus	29.81	9.27
GSMUA_Achr1P21240_001	Banana	nucleus	29.81	8.0
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	33.54	7.71
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	33.54	7.68

Protein Annotations

EnsemblPlants:GSMUA_Achr3P19440_001	EnsemblPlants:GSMUA_Achr3T19440_001	EnsemblPlantsGene:GSMUA_Achr3G19440_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000295CCE4	UniProt:M0SG10	MapMan:35.2

Description

PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G19440_001]

Coordinates

chr3:+:20786017..20790095

Molecular Weight (calculated)

17191.3 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.150

Length

161 amino acids

Sequence
(BLAST)

001: MVGALSSSSS SCASFGSFEE DVTAAAKPFP GAASVKFLCS YGGRILPRYP DGKLRYVGGD TRVLSVDRSV PFSELREKMR ELCGWGAVSV RCQLPTEDLD
101: ALVSVKSDED LTNVVEEYDL AGREKIRAFL FPPSNKGGGE SPTHRATPIS VALNNGGVEI L

Best Arabidopsis Sequence Match ( AT1G70640.1 )
(BLAST)

001: MVPNTTTVKF LCSYGGRITP RYPDGKLRYQ GGDTRVLSVT RAISFTELKK KLGEICGIAV TSLRCQLPTD DLDALVTVRS DEDLKNLMEE YDLAITAQVK
101: IHVFLSPLKS TRTTANSSPP PSTTSSSSSK SRSRSPPSPS TPETCPSCVE RSIRNNGCYV HRSPSHNQLY FINN

Arabidopsis Description

At1g70640 [Source:UniProtKB/TrEMBL;Acc:Q9S843]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.