Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66304 | Canola | cytosol | 70.11 | 73.49 |
| Bra016197.1-P | Field mustard | mitochondrion | 69.54 | 72.89 |
| CDY61217 | Canola | cytosol, mitochondrion | 67.82 | 71.08 |
| CDY20093 | Canola | extracellular, plasma membrane | 68.39 | 61.34 |
| KRH29762 | Soybean | plastid | 31.03 | 45.38 |
| VIT_00s0291g00050.t01 | Wine grape | plastid | 50.57 | 45.13 |
| GSMUA_Achr3P19440_001 | Banana | plastid | 40.8 | 44.1 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 42.53 | 41.11 |
| KRH45586 | Soybean | plastid | 42.53 | 40.66 |
| KRH69636 | Soybean | plastid | 47.7 | 39.15 |
| AT5G63130.2 | Thale cress | nucleus | 41.95 | 38.02 |
| Solyc05g013530.2.1 | Tomato | plastid | 46.55 | 36.99 |
| KRH74522 | Soybean | nucleus | 47.7 | 35.93 |
| PGSC0003DMT400047888 | Potato | cytosol, mitochondrion, plastid | 47.7 | 35.32 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 43.1 | 34.4 |
| GSMUA_Achr8P16400_001 | Banana | plastid | 38.51 | 33.17 |
| GSMUA_Achr10P... | Banana | cytosol | 39.08 | 33.01 |
| Os11t0444900-01 | Rice | cytosol, plastid | 40.8 | 32.87 |
| TraesCS6B01G245800.1 | Wheat | plastid | 37.36 | 32.83 |
| TraesCS6D01G198500.1 | Wheat | plastid | 37.36 | 32.5 |
| TraesCS6A01G217000.1 | Wheat | plastid | 37.36 | 32.34 |
| Os11t0444700-01 | Rice | cytosol | 40.8 | 31.7 |
| EES09698 | Sorghum | cytosol | 41.38 | 30.51 |
| GSMUA_Achr6P06660_001 | Banana | plastid | 41.95 | 30.17 |
| Zm00001d049157_P001 | Maize | plastid | 39.08 | 29.82 |
| HORVU6Hr1G055230.3 | Barley | cytosol | 36.78 | 27.47 |
| AT5G49920.1 | Thale cress | nucleus | 34.48 | 20.83 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 29.31 | 18.75 |
| AT4G05150.1 | Thale cress | nucleus | 31.03 | 11.32 |
| AT5G09620.1 | Thale cress | nucleus | 31.61 | 10.36 |
| AT5G64430.1 | Thale cress | nucleus | 29.31 | 9.94 |
| AT5G16220.1 | Thale cress | plastid | 25.29 | 9.24 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 29.31 | 7.66 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 31.03 | 7.5 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:843401 | ProteinID:AAG52322.1 | ProteinID:AAG52477.1 | ProteinID:AEE35093.1 |
| ArrayExpress:AT1G70640 | EnsemblPlantsGene:AT1G70640 | RefSeq:AT1G70640 | TAIR:AT1G70640 | RefSeq:AT1G70640-TAIR-G | EnsemblPlants:AT1G70640.1 |
| TAIR:AT1G70640.1 | EMBL:BT030622 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000270 |
| RefSeq:NP_177221.1 | InterPro:PB1_dom | PFAM:PF00564 | PO:PO:0000293 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF1 |
| UniProt:Q9S843 | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI00000A45C2 | SEG:seg | : |
Description
At1g70640 [Source:UniProtKB/TrEMBL;Acc:Q9S843]
Coordinates
chr1:+:26636110..26637876
Molecular Weight (calculated)
19158.7 Da
IEP (calculated)
9.273
GRAVY (calculated)
-0.476
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPNTTTVKF LCSYGGRITP RYPDGKLRYQ GGDTRVLSVT RAISFTELKK KLGEICGIAV TSLRCQLPTD DLDALVTVRS DEDLKNLMEE YDLAITAQVK
101: IHVFLSPLKS TRTTANSSPP PSTTSSSSSK SRSRSPPSPS TPETCPSCVE RSIRNNGCYV HRSPSHNQLY FINN
101: IHVFLSPLKS TRTTANSSPP PSTTSSSSSK SRSRSPPSPS TPETCPSCVE RSIRNNGCYV HRSPSHNQLY FINN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.