Factsheet for TraesCS6A01G217000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G198500.1	Wheat	plastid	96.52	97.0
TraesCS6B01G245800.1	Wheat	plastid	93.53	94.95
HORVU6Hr1G055230.3	Barley	cytosol	91.04	78.54
Os11t0444900-01	Rice	cytosol, plastid	69.65	64.81
Os11t0444700-01	Rice	cytosol	66.67	59.82
GSMUA_Achr3P19440_001	Banana	plastid	45.27	56.52
EES09698	Sorghum	cytosol	64.68	55.08
Zm00001d049157_P001	Maize	plastid	59.2	52.19
GSMUA_Achr10P...	Banana	cytosol	48.26	47.09
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	50.25	46.33
GSMUA_Achr8P16400_001	Banana	plastid	43.28	43.07
KRH29762	Soybean	plastid	25.37	42.86
CDY66304	Canola	cytosol	34.83	42.17
Bra032936.1-P	Field mustard	plastid	37.31	41.9
CDY28543	Canola	plastid	36.32	41.48
CDY61217	Canola	cytosol, mitochondrion	33.83	40.96
Bra016197.1-P	Field mustard	mitochondrion	33.83	40.96
CDX83621	Canola	mitochondrion	36.82	40.88
CDY48987	Canola	plastid	36.32	40.78
KRH45586	Soybean	plastid	36.32	40.11
VIT_00s0291g00050.t01	Wine grape	plastid	38.81	40.0
CDY13638	Canola	mitochondrion	35.32	39.23
Bra025209.1-P	Field mustard	mitochondrion	35.32	39.23
AT1G70640.1	Thale cress	cytosol	32.34	37.36
GSMUA_Achr6P06660_001	Banana	plastid	44.78	37.19
KRH69636	Soybean	plastid	38.31	36.32
CDY20093	Canola	extracellular, plasma membrane	34.33	35.57
KRH74522	Soybean	nucleus	39.3	34.2
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	38.81	33.19
Solyc05g013530.2.1	Tomato	plastid	35.32	32.42
TraesCS4A01G281600.1	Wheat	plastid	24.88	20.16
TraesCS2A01G207800.1	Wheat	plastid	26.87	14.56
TraesCS1A01G266900.1	Wheat	nucleus	26.37	14.52
TraesCS6A01G380500.1	Wheat	cytosol	27.86	10.53
TraesCS3A01G051800.1	Wheat	nucleus	24.38	6.96

Protein Annotations

EnsemblPlants:TraesCS6A01G217000.1	EnsemblPlantsGene:TraesCS6A01G217000	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6A:-:399698724..399699429

Molecular Weight (calculated)

22034.1 Da

IEP (calculated)

8.173

GRAVY (calculated)

-0.444

Length

201 amino acids

Sequence
(BLAST)

001: MAGASSWSSS CSCTSSLGSL DDDDVFCVVK PGSPGAAAEG SVKFLCSYGG MILPRHPDGA LRYVGGNNRV LSVDRSLQFH ELQRKLTDMC GWEALSLRCQ
101: LPTEDLDALV SVTTNDDLGH LLEEYDAASR DRLQPLKIRA FLFPRAKTPP LSPSTPSSRP TPAYVRHHHQ HHTARPPPAR GHSGHRRPHQ LLLLHNGSWL
201: Q

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.