Factsheet for TraesCS6A01G380500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT5G64430.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G365200.1	Wheat	cytosol	88.16	95.91
TraesCS6B01G419500.1	Wheat	cytosol	88.16	95.13
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	91.54	88.38
Zm00001d051939_P001	Maize	cytosol	64.29	63.57
EES07730	Sorghum	cytosol	67.11	63.07
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	34.21	61.28
Zm00001d018447_P001	Maize	extracellular	62.22	60.4
KRH57272	Soybean	cytosol	9.96	57.61
VIT_14s0068g01740.t01	Wine grape	cytosol	5.64	41.1
CDY31319	Canola	nucleus	18.98	36.2
VIT_17s0000g07170.t01	Wine grape	cytosol	11.65	35.43
VIT_03s0097g00600.t01	Wine grape	nucleus	31.02	35.33
PGSC0003DMT400016330	Potato	nucleus	29.89	34.64
VIT_18s0001g08010.t01	Wine grape	nucleus	31.95	34.62
VIT_02s0033g00640.t01	Wine grape	cytosol	11.28	34.29
Solyc04g076820.1.1	Tomato	plastid	30.26	33.97
Solyc02g091670.1.1	Tomato	cytosol	17.11	33.7
PGSC0003DMT400078796	Potato	cytosol	17.11	33.7
KRH21700	Soybean	nucleus	27.63	33.41
KRH16903	Soybean	nucleus	22.18	33.33
KRH49860	Soybean	nucleus	29.32	32.98
KRH42038	Soybean	cytosol	29.32	32.77
KRH10652	Soybean	cytosol	27.26	32.51
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.0	32.13
Solyc01g106320.2.1	Tomato	extracellular	29.32	31.64
PGSC0003DMT400008036	Potato	nucleus	28.76	31.16
KRH72507	Soybean	cytosol, nucleus, peroxisome	20.86	30.92
CDY46804	Canola	nucleus	26.88	30.04
Bra031918.1-P	Field mustard	nucleus	26.69	29.96
Bra024295.1-P	Field mustard	nucleus	24.25	29.72
CDX84525	Canola	nucleus	26.88	29.48
CDY58263	Canola	nucleus	26.32	29.23
CDY21590	Canola	nucleus	25.94	29.05
AT5G64430.1	Thale cress	nucleus	28.01	29.04
CDX69896	Canola	nucleus	25.38	28.72
Bra009393.1-P	Field mustard	nucleus	25.38	28.48
TraesCS6A01G217000.1	Wheat	plastid	10.53	27.86
GSMUA_Achr1P05710_001	Banana	cytosol	25.38	27.72
AT5G09620.1	Thale cress	nucleus	25.75	25.8
TraesCS2A01G207800.1	Wheat	plastid	17.11	24.53
TraesCS4A01G281600.1	Wheat	plastid	10.15	21.77
TraesCS1A01G266900.1	Wheat	nucleus	13.35	19.45
TraesCS3A01G051800.1	Wheat	nucleus	18.42	13.92

Protein Annotations

EnsemblPlants:TraesCS6A01G380500.1	EnsemblPlantsGene:TraesCS6A01G380500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	PFAM:PF00564	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6A:+:600815627..600817674

Molecular Weight (calculated)

55683.3 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.481

Length

532 amino acids

Sequence
(BLAST)

001: MADSGDSSPH SAADDAHHHH HPDSTTTTNA APPPAPAVPA KVRLMVSYGG RIQPRPHDNQ LSYVNGDTKI LSIDRPLRFP DFYARLAGLA AARGDLCVKY
101: QLPGEDLDAL VSVTNDEDLE HLVIEYDRLH LFRAPAAPGS GGSSRGGSTP RLRVFLFPVA PPPRPASPPK PPQQELQREW YLDLKSASPP PLPQALPPQM
201: QNQQMQQPQV MMKQEAVPVQ SPPPAAPMAV PQSVVAASKT GPDYLFGFDY GFMPPPAVKV KDPAGDPPKM RENVPVEIPP KNEDRHPNPN PAADNNNNAM
301: VSPAVSPAEF PRQIPDLEKL QLADNATQQQ QPPPAPAPAP APQAAPAPAP VVAPAASVPA PLSRNGSDDS LTRAYPPATA TPTAAAEYYV TKFPEKPPVP
401: PPSSAPPAAA FLPVPGRYGS VAPGSGADPG PFFFIPAPPH GYYTSANPGG TSYYAVPHNN GNANGNGTAP APAVSSAQGY PQVAYDSNGR AVYYTGLLPQ
501: YPSAVNGGGM SASSAVLGTE PSKPVAVKPT VS

Best Arabidopsis Sequence Match ( AT5G09620.1 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.