Factsheet for PGSC0003DMT400016330

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076820.1.1	Tomato	plastid	92.37	89.45
VIT_18s0001g08010.t01	Wine grape	nucleus	62.75	58.66
PGSC0003DMT400008036	Potato	nucleus	47.28	44.2
PGSC0003DMT400078796	Potato	cytosol	24.84	42.22
PGSC0003DMT400069641	Potato	mitochondrion	11.98	31.79
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	28.54	31.64
Zm00001d051939_P001	Maize	cytosol	37.04	31.6
Zm00001d018447_P001	Maize	extracellular	37.04	31.02
EES07730	Sorghum	cytosol	37.91	30.74
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	15.47	30.21
TraesCS6A01G380500.1	Wheat	cytosol	34.64	29.89
TraesCS6B01G419500.1	Wheat	cytosol	32.03	29.82
TraesCS6D01G365200.1	Wheat	cytosol	31.59	29.65
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	34.42	28.68
PGSC0003DMT400046652	Potato	plastid	11.98	27.78
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	17.43	26.94
GSMUA_Achr1P05710_001	Banana	cytosol	28.1	26.49
PGSC0003DMT400057688	Potato	nucleus	23.09	25.48
PGSC0003DMT400097584	Potato	nucleus	16.78	20.92
PGSC0003DMT400015310	Potato	nucleus	28.1	19.58
PGSC0003DMT400014442	Potato	nucleus	25.05	16.79
PGSC0003DMT400067817	Potato	cytosol	20.04	16.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400016330	EnsemblPlantsGene:PGSC0003DMG400006383	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564
PGSC:PGSC0003DMG400006383	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000294F118	UniProt:M1A7H4
MapMan:35.2	:	:	:	:	:

Description

PB1 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006383]

Coordinates

chr4:-:65598791..65600813

Molecular Weight (calculated)

51379.3 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.634

Length

459 amino acids

Sequence
(BLAST)

001: MENYSYSSYP DSVNSSPRSR EIDCENASWD DQPPSSNSNY KVKFMCSYGG KILPRPHDNQ LAYVAGETKI LSVDRNIRFS NLVAKLSLIS DCDVCFKYQL
101: PGEDLDALIS VTNDEDLEHM MLEYDRLYRG PAKPARLRLF LFPLSTPATS TFGSTDSKTE SQWFVDALNS VQLQNLDVNS PTAVSSAPAP ANNPDFLFGL
201: DKGQVQQQQP PPVKLQDPTP PPPVPEVFVK DFAGSDTGSE DRHIIGENVI SPADYQRQIH EMQRLQQHIS NQEQAMYNRK IEESIPRMYP GEYYQQKAPP
301: PQQTAVPVTN SASFWQERHM TTGPYPASSV QTEQPVYIVQ TPAGVYQTPA MRPVTNQMGG QAYYGMQRVM PEVYREQPMY GGVPPQPTIQ QQQMGGAYTS
401: ENMGMVRPHA PPEPTYTQVG YDSVGRQVYY TAPAGVMQQQ MQHPAVAGWL TSINNCVLH

Best Arabidopsis Sequence Match ( AT5G09620.2 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAMYRRKTE DEAGRYFPPT YTQNPAPVTN
301: QQPPVGYWQG NTNNSNIQGN IYTTTSQNLP EQQQQQQQVY MIPAQSQAPG TLYQSVMRPT VQGNQGYYPS PVQRLHHPDA YMEQQNQPGY NVVQPQPTFS
401: GGPQVMTSVG PQVMTSVGPP MGLQEPYSQM GKPVYYTVAG EGMMVQPPPA QPQQQQQQYQ GMGQPVSGMT DLRTGPDGKV AVNMAAPQVS DSV

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.