Factsheet for VIT_18s0001g08010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07170.t01	Wine grape	cytosol	28.72	80.57
VIT_02s0033g00640.t01	Wine grape	cytosol	28.31	79.43
PGSC0003DMT400016330	Potato	nucleus	58.66	62.75
VIT_14s0068g01740.t01	Wine grape	cytosol	9.16	61.64
Solyc04g076820.1.1	Tomato	plastid	59.47	61.6
VIT_03s0097g00600.t01	Wine grape	nucleus	47.66	50.11
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	30.14	35.75
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	10.79	33.33
Zm00001d051939_P001	Maize	cytosol	36.25	33.09
EES07730	Sorghum	cytosol	37.88	32.86
Zm00001d018447_P001	Maize	extracellular	36.66	32.85
TraesCS6A01G380500.1	Wheat	cytosol	34.62	31.95
TraesCS6B01G419500.1	Wheat	cytosol	31.98	31.85
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	18.53	31.82
VIT_00s0291g00050.t01	Wine grape	plastid	12.63	31.79
TraesCS6D01G365200.1	Wheat	cytosol	31.57	31.7
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	34.42	30.67
GSMUA_Achr1P05710_001	Banana	cytosol	30.14	30.39
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.48	25.59
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	16.5	20.93
VIT_14s0006g02490.t01	Wine grape	nucleus	21.38	20.23
VIT_01s0011g04140.t01	Wine grape	nucleus	27.29	19.23
VIT_17s0000g03180.t01	Wine grape	nucleus	24.44	18.81

Protein Annotations

EntrezGene:100255721	wikigene:100255721	Gene3D:3.10.20.90	MapMan:35.2	ProteinID:CCB45686	ProteinID:CCB45686.1
UniProt:F6GZK7	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
EntrezGene:LOC100255721	wikigene:LOC100255721	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002109527	ArrayExpress:VIT_18s0001g08010	EnsemblPlantsGene:VIT_18s0001g08010	EnsemblPlants:VIT_18s0001g08010.t01
RefSeq:XP_002285601	RefSeq:XP_002285601.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:6464840..6466905

Molecular Weight (calculated)

53894.2 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.561

Length

491 amino acids

Sequence
(BLAST)

001: MENYYPYPDS HDSSPRSREI DTENASWDEP PSNYKVKFMC SYGGKIHPRP QDNQLAYVGG ETKILSVDRN IKFPGFMSKI SSICEGEVCL KYQLPGEDLD
101: ALISVTNDED LEHMMLEYDR LCRPSNKQAR LRLFLFPLTP PASTSFGSNE TKSERQWFVD ALNSVQIQPL EGSSPQAAAS ETNPDFLFGL DKGLAPPPPV
201: KLQDPTPPPT VPDVLPKDYS VRSDPGSEDR HVVGDPVVSP ADYQRQIQEL QRLQIASQEQ AMFQRKNDES NTRAYPAEYY AQKIPEKLAP APQQMPVSIP
301: ATYWPERHMT TGGYPVAAST GTEQSVYLIH TSAGVYQTPG LRPMTGQLAQ PYYGMQRVVS DVYREPQVYN AAPPHQQQKV GAYGEGMGMM RPSASGVGVT
401: EQGYAQVTYD STGRQVYYTT PGGAAPSYQA VTTAAAQGDV RQGGVTINQD GKVVAKTKTP HCPVGSWEMV VAGLDVGSIL HGEIAVSLSQ V

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.