Factsheet for VIT_12s0035g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21444	Canola	mitochondrion	31.01	45.45
Bra000599.1-P	Field mustard	mitochondrion	31.01	45.28
CDX83177	Canola	mitochondrion	31.01	45.11
CDX91540	Canola	nucleus	32.04	43.97
AT5G49920.1	Thale cress	nucleus	32.56	43.75
KRH06059	Soybean	nucleus	30.23	43.66
KRH26304	Soybean	nucleus	29.2	43.3
CDY16375	Canola	nucleus	31.52	43.26
Bra022508.1-P	Field mustard	nucleus	31.27	42.91
PGSC0003DMT400097584	Potato	nucleus	39.28	41.3
VIT_00s0291g00050.t01	Wine grape	plastid	17.57	34.87
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	14.21	34.59
VIT_14s0068g01740.t01	Wine grape	cytosol	6.2	32.88
GSMUA_Achr11P...	Banana	plastid	23.77	29.97
GSMUA_Achr3P21900_001	Banana	nucleus	28.42	29.89
TraesCS1A01G266900.1	Wheat	nucleus	25.58	27.12
TraesCS1D01G267100.1	Wheat	nucleus	25.58	27.05
Os05t0427100-01	Rice	cytosol	25.58	27.05
OQU78054	Sorghum	cytosol	24.55	25.96
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	26.36	25.12
Zm00001d010214_P003	Maize	cytosol	24.29	23.98
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	17.57	23.78
HORVU1Hr1G065470.6	Barley	mitochondrion	26.61	23.73
VIT_17s0000g07170.t01	Wine grape	cytosol	10.59	23.43
VIT_02s0033g00640.t01	Wine grape	cytosol	9.3	20.57
VIT_03s0097g00600.t01	Wine grape	nucleus	20.67	17.13
VIT_18s0001g08010.t01	Wine grape	nucleus	20.93	16.5
VIT_14s0006g02490.t01	Wine grape	nucleus	16.28	12.14
VIT_01s0011g04140.t01	Wine grape	nucleus	19.38	10.76
VIT_17s0000g03180.t01	Wine grape	nucleus	17.57	10.66

Protein Annotations

EntrezGene:100257434	wikigene:100257434	Gene3D:3.10.20.90	MapMan:35.2	ProteinID:CCB55043	ProteinID:CCB55043.1
UniProt:F6HK40	EMBL:FN595990	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
EntrezGene:LOC100257434	wikigene:LOC100257434	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF13
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00021087F1	ArrayExpress:VIT_12s0035g01050	EnsemblPlantsGene:VIT_12s0035g01050	EnsemblPlants:VIT_12s0035g01050.t01
unigene:Vvi.20232	RefSeq:XP_002263275	RefSeq:XP_002263275.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:20811695..20814293

Molecular Weight (calculated)

41834.2 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.521

Length

387 amino acids

Sequence
(BLAST)

001: MVIWNIGWGL PLFFKDGFCR LIFIAKNKTK PKNQRRDWNL WLAFVWLSAV MAAEGAGGGG SDGGGCGGGR GGGGGGGNEM AGTSPKNRVK LLCSHGGKIL
101: PRATDGVLKY VGGETRVVAF SRDINFSELK QKVTSLFDGD LVLKYQLSPE DLDALVSVKS DEDLRHMLDE YDRQEGEGTP RLRAFLFPSA PVVLDVQITS
201: TDPHALEQRY IDAINGIVRI RPTLKIIPPK PSLASFTISS ACSSPNSLSP DPFSHDSTTS HESVVPRGAL MHKVRSSPSL YSPDQQTADT HLSSPLVYQH
301: PNHYHQNYQQ YHHPGFQSAR PPQDPSKGAA GERSTSGLSK GRTDSGRGLM GSGPSSYYSS ARQHKGFGSS NKYVHLEEGS SHGGQKA

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.