Factsheet for VIT_01s0011g04140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g04280.t01
VIT_17s0000g09190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	VIT_09s0002g04280.t01	AT3G16120.1	21798944
AT2G01190.1	VIT_17s0000g09190.t01	AT3G48240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35888	Soybean	nucleus	63.85	62.94
KRG90906	Soybean	nucleus, plastid	63.56	61.44
Zm00001d003965_P001	Maize	mitochondrion	9.33	59.09
Solyc05g008830.2.1	Tomato	nucleus	50.79	55.05
KRH38173	Soybean	nucleus	49.21	52.61
Bra024899.1-P	Field mustard	nucleus, plastid	53.52	51.38
HORVU3Hr1G008310.1	Barley	cytosol	10.47	51.05
CDY41073	Canola	nucleus, plastid	46.2	51.03
AT2G01190.1	Thale cress	nucleus, plastid	52.51	50.83
CDY17690	Canola	nucleus, plastid	52.8	50.83
Bra017462.1-P	Field mustard	cytosol, plastid	46.77	50.78
VIT_17s0000g03180.t01	Wine grape	nucleus	45.77	50.0
CDY25942	Canola	nucleus, plastid	44.91	49.84
GSMUA_AchrUn_...	Banana	nucleus	26.11	47.15
VIT_14s0006g02490.t01	Wine grape	nucleus	33.29	44.7
VIT_14s0068g01740.t01	Wine grape	cytosol	4.59	43.84
GSMUA_Achr8P18320_001	Banana	nucleus	31.71	42.66
GSMUA_Achr10P...	Banana	nucleus	20.09	41.42
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	16.36	39.86
GSMUA_Achr2P07240_001	Banana	nucleus	30.85	39.09
Zm00001d039916_P010	Maize	nucleus	36.3	38.39
Zm00001d008591_P001	Maize	mitochondrion	36.3	38.05
EES00348	Sorghum	nucleus	35.58	37.41
Os01t0139200-01	Rice	nucleus	35.58	36.96
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	36.87	36.71
GSMUA_Achr1P21240_001	Banana	nucleus	31.42	36.5
TraesCS3A01G051800.1	Wheat	nucleus	36.3	35.94
TraesCS3D01G050900.1	Wheat	nucleus	34.15	35.9
VIT_17s0000g07170.t01	Wine grape	cytosol	8.9	35.43
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	35.72	35.42
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	8.03	35.22
TraesCS3B01G060500.1	Wheat	cytosol	33.43	35.2
VIT_02s0033g00640.t01	Wine grape	cytosol	8.46	33.71
VIT_00s0291g00050.t01	Wine grape	plastid	9.18	32.82
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	36.44	30.02
VIT_18s0001g08010.t01	Wine grape	nucleus	19.23	27.29
VIT_03s0097g00600.t01	Wine grape	nucleus	17.5	26.12
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	10.76	19.38

Protein Annotations

EntrezGene:100250808	wikigene:100250808	Gene3D:3.10.20.90	MapMan:35.2	ProteinID:CCB50875	ProteinID:CCB50875.1
ncoils:Coil	UniProt:F6HEU9	EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	EntrezGene:LOC100250808	wikigene:LOC100250808	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS51745
PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	SMART:SM00666	SUPFAM:SSF54277	TIGR:TC52165	TIGR:TC64802
UniParc:UPI0001982938	ArrayExpress:VIT_01s0011g04140	EnsemblPlantsGene:VIT_01s0011g04140	EnsemblPlants:VIT_01s0011g04140.t01	unigene:Vvi.7964	RefSeq:XP_002283405
RefSeq:XP_002283405.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3757170..3759841

Molecular Weight (calculated)

75683.1 Da

IEP (calculated)

5.909

GRAVY (calculated)

-0.605

Length

697 amino acids

Sequence
(BLAST)

001: MEAPPVVPPA PPLSSGLGVG VGGPHMSYPD SVDSSPRSRN TDSWDDPLPS VPGAKLRLMC SYGGHIFPRP HDKSLCYVGG DTRIVVADRN SSLADLSARL
101: SKILLQGRSF TLKYQLPNED LDSLISVTTD EDLENMIDEY DRTSALKPSR LRLFLFPNKP ESASSIGSIL DNSTKSDDWF LNCLNGTNLM TRGFSDSASV
201: NCLLSLDEDA VANNLDSSSA RDLEASQPGG FGTCKTVKQG QDVHSVPDSP MLETSSSFGS TSSSPSLANL PPIRVHVEDG SGGGSVRLQD QKLGIEEQFA
301: QMSVAMQKQD EGFVVLSSPA TAGAAVPVMA GGDYPNRVFS DDERSDQGMP VGYRKPPPPQ PQQQPLPPQS QQKSVGGIDL ASPDSVSSDN SIPNAISRPK
401: PMIYQEPVIQ IPSGTNRVSS NPVEQNINLF DPNSRIHMQQ PVQDSGYILA PQFDQQQQQQ QQQQHQQQQQ HQQQQQQQPQ PQPQFIHAGT HYIHHHPTGP
501: LQVPSFYPVY PSQQQHHHHH PHQLDPQYPM YFVPSRQAQA YSLSMQQSNF SEAATGIPSG RSQAPSAPAM VTSPAAYNPT RNAPLQKPEM AAGMYRTGTA
601: AAPLVQVPSS QHQQQYVGYS QIHHPSQSIA PPSAATANYA YEFSDPAHAQ IFYAQAMAPT LPQYQTMTSA PAVVVPEASA QLSTDNIKQQ IRTSQPL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.