CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRH03222
KRH09878
KRH23441
KRH36141
KRH54323
KRH63619

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	KRH09878	AT3G16120.1	21798944
AT2G01190.1	KRH23441	AT3G16120.1	21798944
AT2G01190.1	KRH03222	AT3G48240.1	21798944
AT2G01190.1	KRH54323	AT3G48240.1	21798944
AT2G01190.1	KRH63619	AT3G48240.1	21798944
AT2G01190.1	KRG90619	AT5G08330.1	21798944
AT2G01190.1	KRH36141	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90906	Soybean	nucleus, plastid	95.19	93.34
VIT_01s0011g04140.t01	Wine grape	nucleus	62.94	63.85
Zm00001d003965_P001	Maize	mitochondrion	9.19	59.09
KRH38173	Soybean	nucleus	51.63	55.98
HORVU3Hr1G008310.1	Barley	cytosol	10.75	53.15
Solyc05g008830.2.1	Tomato	nucleus	47.52	52.26
CDY41073	Canola	nucleus, plastid	44.55	49.92
Bra017462.1-P	Field mustard	cytosol, plastid	45.26	49.84
CDY25942	Canola	nucleus, plastid	43.99	49.52
AT2G01190.1	Thale cress	nucleus, plastid	50.21	49.31
GSMUA_AchrUn_...	Banana	nucleus	26.87	49.22
Bra024899.1-P	Field mustard	nucleus, plastid	50.21	48.9
CDY17690	Canola	nucleus, plastid	49.79	48.62
KRH57272	Soybean	cytosol	5.94	45.65
KRH39133	Soybean	cytosol	42.72	45.14
GSMUA_Achr10P...	Banana	nucleus	20.65	43.2
KRH48572	Soybean	cytosol	38.9	42.9
GSMUA_Achr8P18320_001	Banana	nucleus	29.84	40.73
GSMUA_Achr2P07240_001	Banana	nucleus	30.41	39.09
Zm00001d039916_P010	Maize	nucleus	34.37	36.87
EES00348	Sorghum	nucleus	34.37	36.65
Os01t0139200-01	Rice	nucleus	34.23	36.07
Zm00001d008591_P001	Maize	mitochondrion	33.8	35.94
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	35.5	35.86
TraesCS3D01G050900.1	Wheat	nucleus	32.39	34.54
TraesCS3A01G051800.1	Wheat	nucleus	34.37	34.52
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	34.09	34.28
GSMUA_Achr1P21240_001	Banana	nucleus	28.85	34.0
TraesCS3B01G060500.1	Wheat	cytosol	31.54	33.69
KRH03222	Soybean	cytosol	9.34	33.33
KRH54323	Soybean	cytosol, nucleus, plastid	8.63	32.8
KRH41951	Soybean	nucleus	19.38	32.54
KRH63619	Soybean	plastid	8.91	32.47
KRH49930	Soybean	nucleus	18.39	30.66
KRH69636	Soybean	plastid	8.91	29.72
KRH45586	Soybean	plastid	7.64	29.67
KRH29762	Soybean	plastid	4.95	29.41
KRH21700	Soybean	nucleus	17.96	28.86
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	34.23	28.61
KRH10652	Soybean	cytosol	17.96	28.48
KRH74522	Soybean	nucleus	9.19	28.14
KRH26304	Soybean	nucleus	10.18	27.59
KRH49860	Soybean	nucleus	18.25	27.27
KRH06059	Soybean	nucleus	10.33	27.24
KRH42038	Soybean	cytosol	18.25	27.1
KRH72507	Soybean	cytosol, nucleus, peroxisome	13.58	26.74
KRH16903	Soybean	nucleus	13.3	26.55

Protein Annotations

EMBL:ACUP02006706	EnsemblPlants:KRH35888	EnsemblPlantsGene:GLYMA_10G270200	EntrezGene:100775954	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3
PFAM:PF00564	PFscan:PS51745	ProteinID:KRH35888	ProteinID:KRH35888.1	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI000233CF33	UniProt:I1LES5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr10:+:49255968..49258602

Molecular Weight (calculated)

76519.9 Da

IEP (calculated)

6.125

GRAVY (calculated)

-0.666

Length

707 amino acids

Sequence
(BLAST)

001: MEAQPPTPST APPPLPPHLS YPDSVESSPR SRNTDSWDEP FAPASTKLRL MCSYGGHIVP RPHDKSLCYV GGDTRIIVSE RATSLADLSM RLSKTFLNGR
101: PFTLKYQLPN EDLDSLISVT TDEDLENMID EYDRTAASAT SAVKPSRIRL FLFPTKPEST HSIPPQILDT SAKSDDWFLN ALNGAGLLNR GFSDSASVNC
201: LLGLDDEVAG NNLEPGSKDG GDGGGGGGVG GGGASQGGSF GNGKNLKQDV HSIPDSPMLE TTSSFGSTSS SPSLANLPPI RVHVVEDQKV LGIEEQFAQM
301: GVGVGQKQQQ QDEGFVLLSS PPPPPVPATL AAVGVPIGPA TVVAGEYHNR VVSDDERSDH GVSVGYRKPP TPPPQVQSQT QAQSQAQTQT LAPQFQQKST
401: GGGAVVDLPS PDSVSSDSSL ANAISRSKPA VYQEQVQIQS GTTRVPSNPV DPKLNVSDPH GRIQMQQHVQ DPGYLLQQQF EQHQQLQSQQ PQQQFEQQHH
501: QHQQTLPQQQ QQFIHGTHFI HHNPAIPAYY PVYPSQQHPQ HPQVYYVTAR QAQAYNLPVQ QANMGESAGN IASSRPQTPP NPSTLVQQPA TYNPIRNAPM
601: PKTEMNAYRA ATAGTPQLVQ VPTSQHQQQY VTYSQIHHPS QSMAPNSAAP ANYAFDYADP AHAQIYYSQP MAPTMPSQYQ TMMMQEGSAQ HPSDSVKQQQ
701: IRTSQPL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.