CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH10652
KRH21700
KRH42038
KRH49860
KRH52586
KRH57272
KRH61926
KRH67075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	KRH52586	AT1G22920.1	21798944
AT3G48240.1	KRH61926	AT1G22920.1	21798944
AT3G48240.1	KRG95394	AT5G22355.1	21798944
AT3G48240.1	KRH67075	AT5G22355.1	21798944
AT3G48240.1	KRH10652	AT5G64430.1	21798944
AT3G48240.1	KRH21700	AT5G64430.1	21798944
AT3G48240.1	KRH42038	AT5G64430.1	21798944
AT3G48240.1	KRH49860	AT5G64430.1	21798944
AT3G48240.1	KRH57272	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63619	Soybean	plastid	90.32	86.6
KRH03222	Soybean	cytosol	63.98	60.1
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	44.09	51.57
CDY41501	Canola	cytosol	49.46	48.68
Bra038608.1-P	Field mustard	nucleus	48.92	46.91
CDX84387	Canola	nucleus	48.92	46.43
AT5G63130.2	Thale cress	nucleus	47.31	45.83
KRH29762	Soybean	plastid	29.03	45.38
CDY48129	Canola	cytosol, nucleus, plastid	46.24	45.03
CDY72321	Canola	plastid	43.01	44.69
CDY48161	Canola	plastid	43.01	43.72
CDY39571	Canola	plastid	43.01	43.72
Bra018071.1-P	Field mustard	plastid	43.01	43.72
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	41.4	42.78
PGSC0003DMT400069641	Potato	mitochondrion	39.78	42.77
PGSC0003DMT400046652	Potato	plastid	44.62	41.92
Bra035855.1-P	Field mustard	cytosol	43.01	41.88
KRH45586	Soybean	plastid	39.78	40.66
Solyc06g071750.2.1	Tomato	plastid	39.78	38.34
KRH69636	Soybean	plastid	43.01	37.74
KRH57272	Soybean	cytosol	17.74	35.87
KRH74522	Soybean	nucleus	43.01	34.63
KRH26304	Soybean	nucleus	31.72	22.61
KRH06059	Soybean	nucleus	31.18	21.64
KRH16903	Soybean	nucleus	26.34	13.84
KRH72507	Soybean	cytosol, nucleus, peroxisome	26.34	13.65
KRH21700	Soybean	nucleus	31.72	13.41
KRH10652	Soybean	cytosol	31.18	13.0
KRH41951	Soybean	nucleus	28.49	12.59
KRH49930	Soybean	nucleus	26.88	11.79
KRH42038	Soybean	cytosol	29.57	11.55
KRH49860	Soybean	nucleus	27.96	10.99
KRH48572	Soybean	cytosol	30.65	8.89
KRH35888	Soybean	nucleus	32.8	8.63
KRH38173	Soybean	nucleus	29.57	8.44
KRG90906	Soybean	nucleus, plastid	32.26	8.32
KRH39133	Soybean	cytosol	29.57	8.22

Protein Annotations

EMBL:ACUP02003514	EnsemblPlants:KRH54323	EnsemblPlantsGene:GLYMA_06G178000	EntrezGene:100797123	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF10
PFAM:PF00564	ProteinID:KRH54323	ProteinID:KRH54323.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277
UniParc:UPI000233AA61	UniProt:I1KCB9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:15064156..15066145

Molecular Weight (calculated)

20322.2 Da

IEP (calculated)

9.545

GRAVY (calculated)

-0.438

Length

186 amino acids

Sequence
(BLAST)

001: MESKPGQTIK LLCSYGGKIL PRATDGELRY AGGHTRVLTV ARSISFSELM VKLSEFCGSS VILRCQLPKG DLETLISITN DEDLASIIEE YDRASLKLAH
101: PLKIKAVLSP PKSSKKTPSA PSSASSSASH SPSRSPHTST DSLPYAAYHR IGRHNRPPPA KASCYTQFDG SPRFLYRGPH CNYYCH

Best Arabidopsis Sequence Match ( AT5G63130.1 )
(BLAST)

001: MVAVDYTEKN SGSSLKFLCS YGGRILPRST DGKLRYVGGH TRVLSVDRSI SFSELMKKLY EFCGYSVDLR CQLPNGDLET LISVKSEEEL AEIVEEYDRI
101: CGAKIRAVLS PPRSSHKTES SPSSSGDRSP KSPFSVTPSP PNSPSPAYGR YLQSRYCLPS TDLPPRRYIQ RAEESHCCYA CRVHKDSRLV WH

Arabidopsis Description

At5g63130 [Source:UniProtKB/TrEMBL;Acc:Q9FML0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.